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Report for CCDS39424.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39424.1 Public Mus musculus 6 Col28a1 23 108 98 CCDS HistoryNCBI Gene:213945Re-query CCDS DB by CCDS ID:39424.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39424.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115537.1 ENSMUSP00000111199.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115537.1Link to Ensembl Protein Viewer:ENSMUSP00000111199.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115537Re-query CCDS DB by Protein ID:ENSMUSP00000111199
Original member Current member NCBI NM_001037865.1 NP_001032954.1 Accepted alive Link to Nucleotide Sequence:NM_001037865.1Link to Protein Sequence:NP_001032954.1Re-query CCDS DB by Nucleotide ID:NM_001037865Re-query CCDS DB by Protein ID:NP_001032954Link to BLAST:NP_001032954.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032954.1 1141 Q2UY11-1 1141 100% 0 0

Chromosomal Locations for CCDS 39424.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 7998482 7998654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 7999463 7999649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8012985 8013142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8014496 8015044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8017032 8017068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8022088 8022123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8022220 8022300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8022737 8022805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8059298 8059366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8062222 8062290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8075338 8075406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8075836 8075904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8079695 8079763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8080303 8080371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8083734 8083805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8086107 8086175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8086932 8087003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8091841 8091909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8093063 8093131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8097026 8097094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8103493 8103561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8106595 8106663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8127284 8127352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8128739 8128807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8154147 8154200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8155363 8155407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8158130 8158174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8162200 8162226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8164613 8164654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8166662 8166715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8168108 8168164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8169616 8169636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8175166 8175722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8176232 8176355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3426 nt):
ATGAGGAGAAGAGACGTTGCCTTCTGTCTTCTGCTTTTGCCAGCTTTTATGACTCAAGCAGTGTATGGAC
AAAGAAAGAAAGGACCAAAGCCAAACACACTTGCAAGGAAAAATGACTTCCAGGATGCCATTTGCTTCAT
AGATGTTGTCTTTATCTTGGACAGCTCAGAAAGCTCCAAAATTGTACTCTTTGATAATCAGAAAGATTTT
GTGGACAGCTTGAGTGAGAAGATTTTCCAGTTGACTCCTGGCCGTTCATTAAAATATGACATCAAGCTGG
CAGCCCTTCAGTTTAGCAGCTCGGTCCAGATTGATCCACCCTTGTCTTCTTGGAAGGATCTCCGGACATT
TAAGCAGCGGGTCAAGTCTCTGAATTTAATTGGGCAAGGTACCTTTTCTTATTATGCCATCTCCAATGCC
ACAAGGCTACTTAAAAGAGAAGGGCGTAAAGATGGCGTGAAGGTGGCTTTGCTGATGACTGATGGCATCG
ATCATCCCAAGAGCCCAGATGTCCAAAGTATTTCTGAAGATGCTAGAATTTTGGGAATATCATTTATCAC
CGTTGGACTTTCCACTGTGGTCAATGAAGCCAAACTTCGTTTGATATCTGGGGATCCTTCCAATGAACCC
GTTCTACTATTGAGTGACCCAACACTTGTAGACAGAATTCAGGAACGCCTGGGTGTCTTGTTTGAAAGGA
AGTGTGAACACAAGATCTGTGAATGTGAAAAGGGCGAGCCAGGTGACCCAGGGCCTCCTGGTACCCATGG
AAACCCTGGTATCAAAGGTGAGCGAGGACCAAAAGGAAACCCGGGTGATGCTCAGAAAGGAGAAACTGGA
GAAAGAGGTCCTGTGGGAATCCCTGGGTACAAGGGTGACAAGGGTGAACGAGGAGAATGTGGGAAACCAG
GAATGAAAGGTGACAAAGGACCTGAAGGGCCATATGGACCAAAGGGACCAAGAGGAATTCAGGGCATTGG
TGGACCTCCAGGGGATCCAGGTCCAAAGGGATTTCAAGGAAATAAGGGTGAGCCAGGTCCTCCTGGTCCT
TATGGTCCTCCAGGAGCCCCTGGTATTGGACAGCAAGGTGTTAAGGGTGAGAGGGGCCAGGAAGGAAGAA
TGGGAGCTCCCGGACCGATTGGAATTGGTGAACCCGGACAGCCAGGTCCCCGTGGTCCTGAGGGAGCACC
AGGAGAGCGGGGCCTACCAGGAGAAGGATTTCCTGGACCTAAGGGTGAAAAGGGATCTGAAGGACCAATC
GGCCCACAAGGATTACAAGGCCTGTCAATCAAAGGGGATAAGGGGGATTTGGGACCTGTGGGACCGCAGG
GGCCAGCGGGAATTCCTGGCATCGGAAGCCAAGGCGAGCAGGGGATCCAAGGTCCATCTGGTCCACCTGG
TCCTCAAGGACCCCCAGGACAAGGCTCACCTGGTCCTAAGGGAGAAGTAGGTCAGATGGGACCCACAGGG
CCTAGAGGACCAATGGGCATTGGAGTACAGGGTCCAAAGGGGGAGCCAGGCACAGTGGGGCTCCCAGGAC
AGCCTGGAGTCCCAGGGGAAGATGGGGCCTCTGGAAAGAAGGGAGAAGCTGGACTTCCAGGAACAAGAGG
CCCAGAAGGAATGCCTGGGAAAGGACAGCCCGGCCCCAAGGGTGATGAAGGAAAGAAAGGGAGCAAAGGA
AATCAAGGACAGAGGGGGTTTCCAGGACCCGAAGGGCCAAAGGGAGAGCCAGGTGTTATGGGCCCCTTCG
GAATGCCCGGAGCCTCAATTCCTGGACCATCTGGACCAAAGGGAGACCGAGGAGGACCTGGCATGCCTGG
TCTTAAAGGAGAACCTGGACTTCCTGTTCGAGGACCAAAGGGTGCCCAGGGTCCCCGAGGACCAGTGGGG
GCTCCAGGACTCAAAGGTGATGGCTATCCTGGTGTGGCTGGACCGCGAGGATTGCCAGGACCCCCTGGAC
CAATGGGCTTACGTGGTGTGGGAGACACTGGAGCAAAGGGAGAACCAGGAGTCAGAGGCCCTCCAGGTCC
CTCTGGGCCTCGGGGAATAGGAACCCAAGGACCAAAGGGTGATACTGGGCAAAAGGGCCTGCCTGGCCCT
CCTGGGCCCCCTGGCTATGGATCACAAGGAATTAAAGGGGAGCAAGGACCTCAAGGTTTCCCAGGGTCAA
AGGGCACAGTGGGCCTTGGCCTCCCTGGTCAGAAGGGAGAGCATGGAGACCGGGGTGATGTGGGAAGGAA
AGGCGAAAAGGGAGAAACTGGAGAGCCTGGGTCTCCAGGAAAACAGGGGTTACAAGGACCTAAAGGAGAC
CTGGGACTCACAAAAGAAGAAATTATCAAACTTATCATTGAAATATGTGGTTGTGGGCCCAAATGCAAAG
AGACTCCACTGGAGTTGGTGTTTGTGATTGACAGTTCAGAAAGTGTGGGACCAGAGAACTTTCAGATCAT
CCAAAGTTTTGTGAAGACTTTGGCTGACCGGGTGGCCTTGGACCTTGGCACAGCCCGGATAGGCATAATC
AACTATAGCCACAAGGTGGAGAAGGTGGCTAGCCTGAAGCAGTTTTCCAGCAAGGATGACTTCAAGCTGG
TGGTAGACAACATGCAGTATCTGGGGGAAGGCACCTATACAGCCACTGCTCTTCAAGCAGCTAATGACAT
GTTCAAAGAGGCAAGGCCAGGTGTAAAGAAGGTGGCCTTGGTGATCACGGATGGACAGACAGATTCCCGA
GATAAAAAGAAGCTGGCAGATGTGGTGAAGGATGCCAATGACTCCAACGTGGAAATATTTGTCATTGGAG
TGGTGAAGAAGGATGACCCCAACTTTGAAATTTTTCACAAAGAAATGAATCTCATTGCTACTGATGCAGA
ACATGTGTATCAGTTTGACGACTTCTTTACCCTGCAAGATACTCTGAAGCAAAAGTTGTCTAAAAAAATT
TGTGAAGATTTTGACTCCTATCTCATTCAAGTTTTTGGATCACCATCTTTTCAACCTGAATTTGGGGTAT
CAGAACGAGAGGTCAGCGTATCCACTCCAAAGCCTGCAAAAGAAATGTCTAAGTCGTTTAATGTTTCTAG
AGGCCAAAATGAAGAGACTGAATCGTATGTGTTGACTGAGGCTGGTATCTTGGCCATCCCAACCCCACCT
GAAGCCACCAATACACTTGAGCCATTACTCAGCAGCCGTGAAGGAGTGGAAACAAGAACTCCAAATCCCA
ATTTGTTACAGTCAGAAAAATCTCTGTACAAAGATCCAAGATGCGAGGAAGCCCTGAAGCCCGGGGAATG
TGGCGACTACGTGGTTCGCTGGTATTACGACAAACAGGTCAACTCTTGCGCTCGCTTTTGGTTCAGTGGC
TGCAATGGCTCAGGAAACAGATTCCACAGTGAAAAAGAATGTCGAGAAACCTGCATTAAACAATGA

Translation (1141 aa):
MRRRDVAFCLLLLPAFMTQAVYGQRKKGPKPNTLARKNDFQDAICFIDVVFILDSSESSKIVLFDNQKDF
VDSLSEKIFQLTPGRSLKYDIKLAALQFSSSVQIDPPLSSWKDLRTFKQRVKSLNLIGQGTFSYYAISNA
TRLLKREGRKDGVKVALLMTDGIDHPKSPDVQSISEDARILGISFITVGLSTVVNEAKLRLISGDPSNEP
VLLLSDPTLVDRIQERLGVLFERKCEHKICECEKGEPGDPGPPGTHGNPGIKGERGPKGNPGDAQKGETG
ERGPVGIPGYKGDKGERGECGKPGMKGDKGPEGPYGPKGPRGIQGIGGPPGDPGPKGFQGNKGEPGPPGP
YGPPGAPGIGQQGVKGERGQEGRMGAPGPIGIGEPGQPGPRGPEGAPGERGLPGEGFPGPKGEKGSEGPI
GPQGLQGLSIKGDKGDLGPVGPQGPAGIPGIGSQGEQGIQGPSGPPGPQGPPGQGSPGPKGEVGQMGPTG
PRGPMGIGVQGPKGEPGTVGLPGQPGVPGEDGASGKKGEAGLPGTRGPEGMPGKGQPGPKGDEGKKGSKG
NQGQRGFPGPEGPKGEPGVMGPFGMPGASIPGPSGPKGDRGGPGMPGLKGEPGLPVRGPKGAQGPRGPVG
APGLKGDGYPGVAGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGIGTQGPKGDTGQKGLPGP
PGPPGYGSQGIKGEQGPQGFPGSKGTVGLGLPGQKGEHGDRGDVGRKGEKGETGEPGSPGKQGLQGPKGD
LGLTKEEIIKLIIEICGCGPKCKETPLELVFVIDSSESVGPENFQIIQSFVKTLADRVALDLGTARIGII
NYSHKVEKVASLKQFSSKDDFKLVVDNMQYLGEGTYTATALQAANDMFKEARPGVKKVALVITDGQTDSR
DKKKLADVVKDANDSNVEIFVIGVVKKDDPNFEIFHKEMNLIATDAEHVYQFDDFFTLQDTLKQKLSKKI
CEDFDSYLIQVFGSPSFQPEFGVSEREVSVSTPKPAKEMSKSFNVSRGQNEETESYVLTEAGILAIPTPP
EATNTLEPLLSSREGVETRTPNPNLLQSEKSLYKDPRCEEALKPGECGDYVVRWYYDKQVNSCARFWFSG
CNGSGNRFHSEKECRETCIKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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