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Report for CCDS24817.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24817.1 Public Mus musculus 11 Grap 23 108 98 CCDS HistoryNCBI Gene:71520Re-query CCDS DB by CCDS ID:24817.1Re-query CCDS DB by GeneID:71520See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24817.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004959.2 ENSMUSP00000004959.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004959.2Link to Ensembl Protein Viewer:ENSMUSP00000004959.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000004959Re-query CCDS DB by Protein ID:ENSMUSP00000004959
Original member Current member NCBI NM_027817.3 NP_082093.1 Accepted alive Link to Nucleotide Sequence:NM_027817.3Link to Protein Sequence:NP_082093.1Re-query CCDS DB by Nucleotide ID:NM_027817Re-query CCDS DB by Protein ID:NP_082093Link to BLAST:NP_082093.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082093.1 217 Q9CX99 217 100% 0 0

Chromosomal Locations for CCDS 24817.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 61653347 61653424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61660222 61660319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61664185 61664307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61669836 61670004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61671673 61671858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGGAGTCCGTGGCCCTGTACAGCTTCCAGGCTACCGAGAGTGACGAGCTGGCCTTCAACAAGGGGGACA
CGCTTAAGATCCTGAACATGGAAGATGACCAGAACTGGTACAAAGCTGAGCTCCGAGGAGCGGAGGGTTT
TGTTCCCAAGAACTACATCCGTGTAAAGCCACACCCGTGGTACTCGGGCAGGATCTCTCGACAGCTGGCT
GAAGAGACTCTGATGAAACGCAACCACCTAGGAGCCTTCCTGATCAGGGAGAGTGAGAGTTCCCCTGGCG
AGTTCTCCGTCTCTGTGAATTATGGTGACCAGGTGCAGCACTTCAAAGTGCTTCGAGAGGCCTCAGGGAA
GTACTTCCTGTGGGAGGAGAAGTTCAACTCCCTCAACGAGCTGGTCGACTTCTACCGCACCACCACCATC
GCCAAGAGGCGGCAGATCTTCCTGTGTGACGAGCAACCACTGATCAAGCCATCCCGGGCTTGCTTTGCCC
AGGCCCAGTTTGACTTCTCGGCACAGGATCCATCTCAGCTCAGCCTCCGCCGAGGTGACATCGTGGAAGT
TGTGGAGCGTGAGGATCCACACTGGTGGCGGGGCCGGGCAGGCGGGCGCCTGGGCTTCTTCCCACGGAGC
TACGTGCAACCGGTACACTTGTGA

Translation (217 aa):
MESVALYSFQATESDELAFNKGDTLKILNMEDDQNWYKAELRGAEGFVPKNYIRVKPHPWYSGRISRQLA
EETLMKRNHLGAFLIRESESSPGEFSVSVNYGDQVQHFKVLREASGKYFLWEEKFNSLNELVDFYRTTTI
AKRRQIFLCDEQPLIKPSRACFAQAQFDFSAQDPSQLSLRRGDIVEVVEREDPHWWRGRAGGRLGFFPRS
YVQPVHL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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