NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS7793.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7793.1 Public Homo sapiens 11 AKIP1 24 110 108 CCDS HistoryNCBI Gene:56672Re-query CCDS DB by CCDS ID:7793.1Re-query CCDS DB by GeneID:56672See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7793.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309377.9 ENSP00000310459.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000309377.9Link to Ensembl Protein Viewer:ENSP00000310459.4Re-query CCDS DB by Nucleotide ID:ENST00000309377Re-query CCDS DB by Protein ID:ENSP00000310459
Original member Current member EBI ENST00000534147.5 ENSP00000431331.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000534147.5Link to Ensembl Protein Viewer:ENSP00000431331.1Re-query CCDS DB by Nucleotide ID:ENST00000534147Re-query CCDS DB by Protein ID:ENSP00000431331
Original member Current member NCBI NM_020642.4 NP_065693.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020642.4Link to Protein Sequence:NP_065693.2Re-query CCDS DB by Nucleotide ID:NM_020642Re-query CCDS DB by Protein ID:NP_065693Link to BLAST:NP_065693.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065693.2 210 Q9NQ31-1 210 100% 0 0

Chromosomal Locations for CCDS 7793.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 8911450 8911671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8912453 8912533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8914826 8914930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8917287 8917367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 8919337 8919480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (633 nt):
ATGGACAACTGTTTGGCGGCCGCAGCGCTGAATGGGGTGGACCGACGTTCCCTGCAGCGTTCAGCAAGGC
TGGCTCTAGAAGTGCTGGAGAGGGCCAAGAGGAGGGCGGTGGACTGGCATGCCCTGGAGCGTCCCAAAGG
CTGCATGGGGGTCCTTGCCCGGGAGGCGCCCCACCTAGAGAAACAGCCGGCAGCCGGCCCGCAGCGCGTT
CTCCCGGGAGAGAGAGAAGAGAGACCCCCAACCCTTAGTGCTTCCTTCAGAACAATGGCTGAATTCATGG
ACTATACTTCAAGTCAGTGTGGGAAATATTATTCATCTGTGCCAGAGGAAGGAGGGGCAACCCATGTCTA
TCGTTATCACAGAGGCGAGTCGAAGCTGCACATGTGCTTGGACATAGGGAATGGTCAGAGAAAAGACAGA
AAAAAGACATCCCTTGGTCCTGGAGGCAGCTATCAAATATCAGAGCATGCTCCAGAGGCATCCCAGCCTG
CTGAGAACATCTCTAAGGACCTCTACATAGAAGTATATCCAGGGACCTATTCTGTCACTGTGGGCTCAAA
TGACTTAACCAAGAAGACTCATGTGGTAGCAGTTGATTCTGGACAAAGCGTGGACCTGGTCTTCCCTGTG
TGA

Translation (210 aa):
MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLEKQPAAGPQRV
LPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYHRGESKLHMCLDIGNGQRKDR
KKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTYSVTVGSNDLTKKTHVVAVDSGQSVDLVFPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH