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Report for CCDS38461.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38461.1 Public Mus musculus 3 Map9 23 108 98 CCDS HistoryNCBI Gene:213582Re-query CCDS DB by CCDS ID:38461.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38461.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091014.9 ENSMUSP00000088535.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091014.9Link to Ensembl Protein Viewer:ENSMUSP00000088535.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000091014Re-query CCDS DB by Protein ID:ENSMUSP00000088535
Original member Current member EBI ENSMUST00000195640.1 ENSMUSP00000142206.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000195640.1Link to Ensembl Protein Viewer:ENSMUSP00000142206.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000195640Re-query CCDS DB by Protein ID:ENSMUSP00000142206
Original member Current member NCBI NM_001081230.1 NP_001074699.1 Accepted alive Link to Nucleotide Sequence:NM_001081230.1Link to Protein Sequence:NP_001074699.1Re-query CCDS DB by Nucleotide ID:NM_001081230Re-query CCDS DB by Protein ID:NP_001074699Link to BLAST:NP_001074699.1
Original member Current member NCBI NM_001356457.1 NP_001343386.1 Accepted alive Link to Nucleotide Sequence:NM_001356457.1Link to Protein Sequence:NP_001343386.1Re-query CCDS DB by Nucleotide ID:NM_001356457Re-query CCDS DB by Protein ID:NP_001343386Link to BLAST:NP_001343386.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074699.1 646 Q3TRR0-1 646 100% 0 0
NP_001343386.1 646 Q3TRR0-1 646 100% 0 0

Chromosomal Locations for CCDS 38461.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 82359050 82359124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82359890 82359974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82363291 82363614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82371179 82371402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82374108 82374201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82376923 82377167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82378937 82379007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82380078 82380246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82381894 82381983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82383208 82383369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82383516 82383661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82383845 82383977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82391128 82391250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1941 nt):
ATGTCCGATGAAATCTTCAGCACAACTTTGGCGTACACCAAGAGTCCAAAGGCTACCAAGAGAACTTCCT
TTCAGGATGAGCTGATCAGAGCCATTACAGCCCGGTCAGCCAGGCAGAGAAGTTCCGAATACTCCGATGA
CTTTGACAGTGACGAGATTGTTTCTTTAGGTGAATTTTCAGATACCTCGACAGATGAAAGTCTAGTTAGA
AAAAAGATGAATGATTTTCATATATCCGACGATGAGGAAAAAAATTCTCCAAGACTGTCTTTTTTGAAAA
CCAAGAAAGTAAACAGGGCAATATCCAACGATGCTCTGGACTCCAGCACTCCGGGCAGCGAAGGCTCGTC
ACCGGATGCTCAAGAAGATGTGACTGGAGATTCCCTCCCCAAATCTCAAAATGATGATCGAGAAGTCGGC
AGAGAGATCATCACAGTGAAGCCTACACCCAGGATGCACCCCGTCAAAAGAAGCACGTCCTCGGGGGAAA
CCAGCAGCGGTCTTGATGCAGATGGCCACTTTAAGCCTTCACCCCAGCCAAGGAGCATGTTAAAAAAGAG
CAGCCACACTGAGGAGGGAGTCAGACCAGGAGTTGATAAAGAACATTCCATAAGCGAAGCCTCTGCTCCC
ACACCTTCCCTTCCAAGGCAGAATGGCACAGAGTTGCAAACTGAGGAAAAAATATACTCGGAAAACCTCG
ATCTTGAGGACTCACTCTTACAAAGTCTGACCTCATCTTCCTTCAAAGAAAGCCCCGGAGGTTGCACATC
ACCAGGATCTCAGGAAAAGGTGCCCATAAAAGATCATGATGGAGAACCTACTGAAATCTGGGATTCCTTG
CTATCAAATGAAAATGAAGGAAGTTCTGTTTTGGTGAACTGTGTTACTCCTGAACTCGAGCAGCCCAAGG
ACGGTCAGGTGGCAGCTGACGACCTTGAGGAAGAAAGAGAGAAGGGTGGATTTACAGAAGATGACCTCAC
CACTGACCCGCTGCTCTCCACGTCCCCGAGTGTCATAACACCCACTGAGCCAGCAGAGCCGGCCAAGAAA
GCAAATGAAGACAGAAACACGAAGAATAAAAAGACAACGAATAACAGAGTGTCCAGTGCCTCTGGCAGGC
TGATGACCTCTGAGTTTTTAAAGAGATCCGGTCCCACAAAAAGAAGTCCATCTGCAGCTACCTCCTCACA
CTATTTAGGGAGTTTGAAAGTCTTGGACCAGAAGCAACCACGGAAGCAGAGCCTAGAGCCAGACAAGGCT
GATCACATAAGGGCAGCTGTTTATCAGGAGTGGTTAGAAAAGAAAAATGTGTATTTACATGAAATGCACA
GAATAAAAAGAATTGAAAGCGAAAACTTGAGGATCCAAAATGAACAGAAAAAAGCTGCTAAGAGAGAGGA
AGCCCTGGCATCATTTGAGGCCTGGAAGGCAATGAAAGAGAAGGAAGCAAAGAGAATAGCTGCAAAAAAG
AGGCTGGAGGAAAAGAACAAGAAGAAAACAGAAGAAGAAAATGCCATGAGGAAAGGCGAGGCCCTGCAAG
CATTTGAAAAATGGAAAGAGAAAAAGCTAGAATACCTCAAAGAGAAGACCAGGAGGGAGAAAGAATATGA
AAGAGCAAAGAAACAGAAAGAAGAGGAAGCGGTTGCTGAGAAAAAGAAAGACAGTTTAACTGCTTTTGAA
AAATGGAGTGAGAGAAAGGAAGCTCTCCTCAAGCAAAAGGAGAAGGAGAAAATAAATGAGAGAAGAAAGG
AAGAGCTGAAGAGAGCCGAGAAGAAAGACAAAGACAAGCAAGCCATCAGTGAATACGAAAAGTGGCTGGA
AAAGAAAGAAAGGCAAGAAAGAATTGAACGGAAACAGAAGAAGCGCCACTCCTTCCTTGAGAGCGAGACA
CACCCACCATGGAGTCCTCCGAGCAGAACTGCGCCCTCAAAAGTATTTTGA

Translation (646 aa):
MSDEIFSTTLAYTKSPKATKRTSFQDELIRAITARSARQRSSEYSDDFDSDEIVSLGEFSDTSTDESLVR
KKMNDFHISDDEEKNSPRLSFLKTKKVNRAISNDALDSSTPGSEGSSPDAQEDVTGDSLPKSQNDDREVG
REIITVKPTPRMHPVKRSTSSGETSSGLDADGHFKPSPQPRSMLKKSSHTEEGVRPGVDKEHSISEASAP
TPSLPRQNGTELQTEEKIYSENLDLEDSLLQSLTSSSFKESPGGCTSPGSQEKVPIKDHDGEPTEIWDSL
LSNENEGSSVLVNCVTPELEQPKDGQVAADDLEEEREKGGFTEDDLTTDPLLSTSPSVITPTEPAEPAKK
ANEDRNTKNKKTTNNRVSSASGRLMTSEFLKRSGPTKRSPSAATSSHYLGSLKVLDQKQPRKQSLEPDKA
DHIRAAVYQEWLEKKNVYLHEMHRIKRIESENLRIQNEQKKAAKREEALASFEAWKAMKEKEAKRIAAKK
RLEEKNKKKTEEENAMRKGEALQAFEKWKEKKLEYLKEKTRREKEYERAKKQKEEEAVAEKKKDSLTAFE
KWSERKEALLKQKEKEKINERRKEELKRAEKKDKDKQAISEYEKWLEKKERQERIERKQKKRHSFLESET
HPPWSPPSRTAPSKVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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