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Report for CCDS28644.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28644.1 Public Mus musculus 17 Tap2 23 108 98 CCDS HistoryNCBI Gene:21355Re-query CCDS DB by CCDS ID:28644.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28644.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025197.5 ENSMUSP00000025197.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025197.5Link to Ensembl Protein Viewer:ENSMUSP00000025197.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000025197Re-query CCDS DB by Protein ID:ENSMUSP00000025197
Original member Current member NCBI NM_011530.3 NP_035660.3 Accepted alive Link to Nucleotide Sequence:NM_011530.3Link to Protein Sequence:NP_035660.3Re-query CCDS DB by Nucleotide ID:NM_011530Re-query CCDS DB by Protein ID:NP_035660Link to BLAST:NP_035660.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035660.3 702 P36371 702 100% 0 0

Chromosomal Locations for CCDS 28644.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34205295 34205784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34205870 34205984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34208754 34208884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34209090 34209295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34211870 34212067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34212230 34212358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34214015 34214203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34214323 34214496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34214646 34214805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34215334 34215470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34215914 34216093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2109 nt):
ATGGCGCTGTCCTACCTGAGGCCCTGGGTCTCTCTGCTGCTGGCGGACATGGCTTTACTTGGGTTGCTAC
AAGGATCTCTGGGAAATCTGCTTCCCCAGGGGCTGCCAGGACTCTGGATAGAGGGCACCCTGCGACTTGG
AGTGCTGTGGGGACTGCTAAAAGTGGGAGAGCTGCTGGGACTTGTGGGGACCCTTCTGCCCTTGCTCTGC
CTTGCCACTCCCCTGTTTTTCTCGCTAAGAGCTCTGGTGGGAGGCACCGCGAGCACCTCAGTAGTCCGAG
TGGCTTCTGCCTCTTGGGGCTGGCTGCTGGCTGGCTATGGGGCTGTTGCGCTGAGCTGGGCCGTGTGGGC
TGTGCTGAGCCCGGCTGGAGTCCAGGAGAAGGAACCAGGCCAGGAGAACAGAACACTGATGAAGCGGTTG
CTGAAGCTGTCCAGGCCGGACCTGCCTTTCCTCATAGCTGCCTTCTTCTTCCTTGTGGTGGCTGTGTGGG
GGGAGACATTAATCCCTCGCTATTCGGGTCGTGTAATTGACATCCTGGGAGGTGATTTCGACCCCGACGC
CTTTGCAAGCGCCATCTTTTTCATGTGCCTGTTCTCTGTTGGGAGCTCCTTCTCTGCAGGCTGTAGAGGA
GGCTCCTTCCTCTTCACCATGTCCAGGATCAACCTGCGGATACGAGAGCAGCTTTTCTCATCTTTGTTGC
GCCAAGACCTTGGATTCTTCCAGGAGACCAAGACAGGGGAGCTGAACTCGAGGCTGAGCTCTGACACCTC
TCTGATGAGCCGCTGGCTCCCTTTCAATGCCAATATCCTGCTGCGGAGCCTGGTGAAGGTGGTGGGGCTC
TACTTCTTCATGCTCCAGGTATCGCCCCGACTCACCTTCCTCTCCCTGCTGGACCTGCCCCTCACGATAG
CAGCTGAGAAGGTGTACAACCCCCGCCATCAGGCGGTGCTAAAGGAGATCCAGGATGCAGTGGCCAAGGC
GGGGCAGGTGGTGCGCGAGGCGGTAGGAGGGCTGCAGACTGTGCGAAGCTTTGGGGCCGAGGAGCAGGAA
GTCAGCCACTACAAGGAGGCCCTGGAGCGATGTAGACAGCTGTGGTGGCGCCGAGACCTGGAAAAAGACG
TGTATCTAGTCATACGGAGGGTGATGGCCTTGGGCATGCAGGTGCTGATTCTGAACTGCGGCGTGCAGCA
GATTCTGGCTGGAGAGGTCACCCGGGGTGGCCTGCTCTCCTTCCTGCTGTACCAGGAGGAAGTGGGACAA
TATGTCCGGAACCTGGTTTACATGTACGGGGATATGCTGAGCAACGTGGGCGCTGCTGAAAAGGTGTTTT
CCTACCTGGACCGAAAGCCGAATCTGCCCCAGCCTGGGATCCTGGCCCCTCCCTGGCTGGAGGGGCGCGT
GGAATTCCAAGACGTCTCCTTTTCGTATCCCAGGCGCCCCGAGAAGCCTGTGCTCCAGGGTCTGACGTTC
ACCCTGCATCCTGGAACGGTGACAGCGTTGGTGGGACCCAATGGATCAGGGAAGAGCACCGTGGCCGCCC
TGCTGCAGAACCTGTACCAGCCCACTGGGGGCCAGCTGCTGCTGGATGGCGAGCCCCTGACCGAGTATGA
TCACCACTACCTGCACCGCCAGGTGGTTCTGGTGGGGCAGGAGCCTGTGCTGTTCTCGGGTTCTGTCAAG
GACAATATTGCCTATGGCCTGAGGGACTGTGAGGACGCTCAAGTGATGGCAGCTGCCCAGGCGGCCTGTG
CAGACGACTTCATAGGGGAAATGACTAATGGAATAAACACAGAAATCGGGGAAAAAGGGGGCCAGTTAGC
TGTGGGACAGAAGCAACGTCTGGCCATTGCCCGGGCCCTTGTGCGGAACCCACGGGTCCTCATCCTGGAT
GAGGCTACCAGCGCCCTGGACGCCCAGTGTGAACAGGCCCTACAGAACTGGAGATCGCAGGGGGACAGGA
CGATGCTGGTGATTGCCCACAGGCTGCACACGGTTCAGAATGCTGACCAAGTTCTGGTGCTCAAGCAGGG
ACGTCTGGTGGAGCATGACCAGCTCAGGGACGGCCAGGATGTCTACGCCCACCTGGTACAGCAGCGGCTG
GAGGCATGA

Translation (702 aa):
MALSYLRPWVSLLLADMALLGLLQGSLGNLLPQGLPGLWIEGTLRLGVLWGLLKVGELLGLVGTLLPLLC
LATPLFFSLRALVGGTASTSVVRVASASWGWLLAGYGAVALSWAVWAVLSPAGVQEKEPGQENRTLMKRL
LKLSRPDLPFLIAAFFFLVVAVWGETLIPRYSGRVIDILGGDFDPDAFASAIFFMCLFSVGSSFSAGCRG
GSFLFTMSRINLRIREQLFSSLLRQDLGFFQETKTGELNSRLSSDTSLMSRWLPFNANILLRSLVKVVGL
YFFMLQVSPRLTFLSLLDLPLTIAAEKVYNPRHQAVLKEIQDAVAKAGQVVREAVGGLQTVRSFGAEEQE
VSHYKEALERCRQLWWRRDLEKDVYLVIRRVMALGMQVLILNCGVQQILAGEVTRGGLLSFLLYQEEVGQ
YVRNLVYMYGDMLSNVGAAEKVFSYLDRKPNLPQPGILAPPWLEGRVEFQDVSFSYPRRPEKPVLQGLTF
TLHPGTVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGEPLTEYDHHYLHRQVVLVGQEPVLFSGSVK
DNIAYGLRDCEDAQVMAAAQAACADDFIGEMTNGINTEIGEKGGQLAVGQKQRLAIARALVRNPRVLILD
EATSALDAQCEQALQNWRSQGDRTMLVIAHRLHTVQNADQVLVLKQGRLVEHDQLRDGQDVYAHLVQQRL
EA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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