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Report for CCDS18866.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18866.1 Public Mus musculus 4 Fbxo42 23 108 98 CCDS HistoryNCBI Gene:213499Re-query CCDS DB by CCDS ID:18866.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18866.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030757.9 ENSMUSP00000030757.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030757.9Link to Ensembl Protein Viewer:ENSMUSP00000030757.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000030757Re-query CCDS DB by Protein ID:ENSMUSP00000030757
Original member Current member NCBI NM_172518.3 NP_766106.2 Accepted alive Link to Nucleotide Sequence:NM_172518.3Link to Protein Sequence:NP_766106.2Re-query CCDS DB by Nucleotide ID:NM_172518Re-query CCDS DB by Protein ID:NP_766106Link to BLAST:NP_766106.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766106.2 717 Q6PDJ6 717 100% 0 0

Chromosomal Locations for CCDS 18866.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 141167728 141167977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141170824 141170940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141180398 141180532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141193665 141193818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141195181 141195291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141197483 141197579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141198042 141198098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141198930 141199046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141199449 141200564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2154 nt):
ATGGCCAGCTCCTCGGACAGTGAAGATGACAGTGTCATGGCCGTGGACCAAGAAGAAACTGCACTGGAAG
GGACAATGGAGCAAGATGAGGACCCCCACCCAGTGTTGGAGGTTGAGGAAACAAGACATAATAGGTCCAT
GTCTGAGCTGCCGGAAGAGGTTTTGGAGTATATTCTGTCCTTCCTTTCACCATACCAGGAACACAAGACT
GCAGCTCTGGTCTGCAAACAGTGGTATCGACTTATCAAAGGTGTGGCCCACCAGTGTTACCATGGCTTCA
TGAAGGCTGTCCAGGAAGGAAACATTCAGTGGGAGAGCCGGACTTACCCTTATCCGGGAACCCCTATCAC
TCAGCGCTTCTCCCACAGTGCGTGCTATTATGATGCCAATCAGTCTATGTATGTCTTTGGTGGCTGTACG
CAGAGCAGTTGCAATGCTGCCTTCAATGACCTCTGGAGGCTAGACCTAAATAGCAAGGAGTGGATTCGAC
CATTGGCCTCAGGGTCCTATCCTTCCCCCAAAGCTGGGGCCACTCTGGTCGTGTACAAGGACTTGCTAGT
GCTATTTGGTGGCTGGACAAGGCCAAGTCCCTATCCCTTACACCAGCCAGAGAGATTCTTTGATGAAATT
CACACGTACTCGCCGTCTAAAAACTGGTGGAACTGCATTGTCACCACGCATGGGCCTCCTCCCATGGCTG
GCCATTCCTCCTGTGTGATAGGTGATAAAATGATTGTCTTCGGTGGCTCCTTAGGATCCCGGCAGATGAG
CAATGAAGTCTGGGTCCTGGACCTGGAGCAGTGGGCGTGGTCCAAGCCGAACATCTCTGGCCCCAGTCCA
CACCCTCGAGGTGGCCAGTCTCAGATTGTTATAGATGATACAACTCTTCTGATCCTTGGCGGGTGTGGCG
GTCCCAATGCGCTGTTCAAAGATGCCTGGCTGCTGCACATGCACCCAGGTCCCTGGGCCTGGCAGCCACT
CAAGGTAGAAAATGAAGACCATGGTGCCCCGGAGCTATGGTGTCATCCAGCCTGCCGGGTGGGACAGTGT
GTGGTGGTCTTCAGCCAGGCGCCAAGCGGGAGAGCGCCCCTCAGCCCCAGTTTGAACTCTCGCCCGTCAC
CTATCAGTGCCACTCCTCCAGCCCTGGTTCCTGAGACCCGAGAGTACCGCTCCCAGTCCCCGGTGAGGAG
TATGGACGAAGCGCCCTGTGTTAATGGCCGCTGGGGAACACTGAGGCCCAGGGCTCAAAGGCAGACTCCC
TCGGGTTCCCGGGAAGGGAGCCTCTCCCCAGCCAGAGGAGATGGCTCTCCCATTCTCAATGGTGGAAATT
TGTCTCCAGGGACAGTAGCTGTCGGGGGTGCTTCCTTAGACAGCCCCGTACAGGTCGTGTCTCCAAGCAC
TCCATCTGCCTCTGACGGCTACGACCTAAAAGTAGGACTTTCTCTAGCTCCTCGACGAGGGTCTTTACCA
GATCAGAAGGACCTGAGGTTAAGTTCCATTGATCTGAATTGGGACCTGAAGTCTGCTTCCAGTAGTAGTC
ACGTGGATAGTATAGACAACAGGACAGTTGCAGGGAGTGTGAGACACCCTCCAGAACAGACCAATGGTGT
TCACACCCCACCACATGTGGCCAGTGCCCTTGCAGGGGCTGTATCTCCCGGTGCCCTGCGTCGGAGTTTG
GAAGCCATCAAAGCGATGTCATCCAAAGGCCCCTCAGCCTCGGCAGCACTAAGTCCTCCTCTTGGGTCTT
CTCCAAGCTCCCCTGGGAGTCAGAGCCTGAGCAGTGGAGAAACAGTGCCCAACTCCCGCCCAGGACCAGC
CCAAGGAGATGGTCATTCCTTACCCCCGATTGCTCGGCGCCTGGGCCACCACCCTCCACAGTCCCTTAAT
GTGGGTAAACCCTTGTACCAGAGTATGAACTGCAAACCTATGCAGATGTATGTGCTAGACATTAAAGACA
CCAAGGAGAAGGGCCGAGTCAAGTGGAAAGTGTTCACAAGCAGCTCGGTGGTCGGGCCTCCTGAGACCAG
CCTGCACACGGTGGTGCAGGGCCGAGGCGAGCTCATCGTATTTGGAGGGCTCATGGACAAGAAGCAGAAT
GTGAAGTACTACCCAAAGACAAACGCCTTGTACTTTGTGCGCGCAAAGAGATAA

Translation (717 aa):
MASSSDSEDDSVMAVDQEETALEGTMEQDEDPHPVLEVEETRHNRSMSELPEEVLEYILSFLSPYQEHKT
AALVCKQWYRLIKGVAHQCYHGFMKAVQEGNIQWESRTYPYPGTPITQRFSHSACYYDANQSMYVFGGCT
QSSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLVVYKDLLVLFGGWTRPSPYPLHQPERFFDEI
HTYSPSKNWWNCIVTTHGPPPMAGHSSCVIGDKMIVFGGSLGSRQMSNEVWVLDLEQWAWSKPNISGPSP
HPRGGQSQIVIDDTTLLILGGCGGPNALFKDAWLLHMHPGPWAWQPLKVENEDHGAPELWCHPACRVGQC
VVVFSQAPSGRAPLSPSLNSRPSPISATPPALVPETREYRSQSPVRSMDEAPCVNGRWGTLRPRAQRQTP
SGSREGSLSPARGDGSPILNGGNLSPGTVAVGGASLDSPVQVVSPSTPSASDGYDLKVGLSLAPRRGSLP
DQKDLRLSSIDLNWDLKSASSSSHVDSIDNRTVAGSVRHPPEQTNGVHTPPHVASALAGAVSPGALRRSL
EAIKAMSSKGPSASAALSPPLGSSPSSPGSQSLSSGETVPNSRPGPAQGDGHSLPPIARRLGHHPPQSLN
VGKPLYQSMNCKPMQMYVLDIKDTKEKGRVKWKVFTSSSVVGPPETSLHTVVQGRGELIVFGGLMDKKQN
VKYYPKTNALYFVRAKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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