NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16188.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16188.1 Public Mus musculus 2 Tmx2 23 108 98 CCDS HistoryNCBI Gene:66958Re-query CCDS DB by CCDS ID:16188.1Re-query CCDS DB by GeneID:66958See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16188.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053664.8 ENSMUSP00000059582.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053664.8Link to Ensembl Protein Viewer:ENSMUSP00000059582.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000053664Re-query CCDS DB by Protein ID:ENSMUSP00000059582
Original member Current member EBI ENSMUST00000111665.7 ENSMUSP00000107294.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111665.7Link to Ensembl Protein Viewer:ENSMUSP00000107294.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111665Re-query CCDS DB by Protein ID:ENSMUSP00000107294
Original member Current member NCBI NM_025868.4 NP_080144.1 Accepted alive Link to Nucleotide Sequence:NM_025868.4Link to Protein Sequence:NP_080144.1Re-query CCDS DB by Nucleotide ID:NM_025868Re-query CCDS DB by Protein ID:NP_080144Link to BLAST:NP_080144.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080144.1 295 Q9D710 295 100% 0 0

Chromosomal Locations for CCDS 16188.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 84672389 84672532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84673024 84673153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84673254 84673319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84673500 84673606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84675405 84675481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84675745 84675858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84676097 84676157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84677851 84678039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGGCTGTCCTTGCGCCTCTGATTGCTTTGGTGTACTCGGTGCCGCGGCTTTCTCGATGGCTGGCCCGAC
CTTATTGCCTTCTGTCTGCTCTGCTTTCCATTGCTTTCCTCCTCGTGAGGAAACTGCCACCGATTTGCAA
TGGTCTCCCCACGCAACGCGAAGATGGCAACCCGTGTGACTTTGACTGGAGAGAAGTGGAGATCCTGATG
TTCCTCAGTGCCATTGTGATGATGAAGAACCGCAGATCCATCACTGTGGAGCAACATGTAGGCAACATCT
TTATGTTTAGTAAAGTGGCCAACGCCATCCTTTTCTTCCGACTGGATATTCGAATGGGTCTGCTATACCT
CACACTCTGCATAGTGTTCCTGATGACCTGCAAGCCCCCGCTGTACATGGGTCCTGAGTATATCAAGTAC
TTCAATGATAAAACCATTGATGAGGAGCTGGAGCGAGACAAGAGGGTCACTTGGATTGTGGAGTTCTTTG
CCAACTGGTCTAATGATTGCCAATCCTTTGCTCCCATCTATGCGGACTTGTCCCTCAAGTACAACTGTTC
AGGGCTAAATTTTGGGAAGGTAGATGTTGGACGCTACACTGACGTTAGCACACGGTACAAAGTGAGCACA
TCACCCCTCACCAGACAGCTCCCTACCCTGATTCTGTTCCAAGGCGGCAAGGAGGTCATTCGTCGGCCGC
AGATTGACAAGAAAGGACGAGCTGTCTCTTGGACCTTTTCTGAGGAGAATGTGATTCGAGAATTCAACTT
GAATGAGCTATACCAACGAGCCAAGAAGCACTCAAAGGGTGGAGACATGTCAGAAGAGAAGCCTGTGGAC
CCTGCTCCCACTACTGTGCCAGATGGGGAAAACAAGAAGGACAAATAG

Translation (295 aa):
MAVLAPLIALVYSVPRLSRWLARPYCLLSALLSIAFLLVRKLPPICNGLPTQREDGNPCDFDWREVEILM
FLSAIVMMKNRRSITVEQHVGNIFMFSKVANAILFFRLDIRMGLLYLTLCIVFLMTCKPPLYMGPEYIKY
FNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCSGLNFGKVDVGRYTDVSTRYKVST
SPLTRQLPTLILFQGGKEVIRRPQIDKKGRAVSWTFSEENVIREFNLNELYQRAKKHSKGGDMSEEKPVD
PAPTTVPDGENKKDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH