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Report for CCDS15308.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15308.1 Public Mus musculus 1 Cyb5r1 23 108 98 CCDS HistoryNCBI Gene:72017Re-query CCDS DB by CCDS ID:15308.1Re-query CCDS DB by GeneID:72017See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15308.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027726.13 ENSMUSP00000027726.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027726.13Link to Ensembl Protein Viewer:ENSMUSP00000027726.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027726Re-query CCDS DB by Protein ID:ENSMUSP00000027726
Original member Current member NCBI NM_028057.3 NP_082333.1 Accepted alive Link to Nucleotide Sequence:NM_028057.3Link to Protein Sequence:NP_082333.1Re-query CCDS DB by Nucleotide ID:NM_028057Re-query CCDS DB by Protein ID:NP_082333Link to BLAST:NP_082333.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082333.1 305 Q9DB73-1 305 100% 0 0

Chromosomal Locations for CCDS 15308.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 134406039 134406053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134406313 134406462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134406599 134406671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134407046 134407152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134407574 134407703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134408404 134408487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134409601 134409686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134410493 134410592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134410907 134411079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGGGATCCAGCCGAGCCCGGTCTTGCTAGCCTCTCTGGGGGTGGGGCTGCTTACTCTGCTCGGCCTGG
CTCTGGGTACCTACTTGGTTCGAAGATCCCGCCGGCCGCAGGTTACTCTCCAGGACCCGGATGAGAAGTA
CCTGCTGCGATTGCTAGACAAGACGACAGTGAGCCACAACACCAGGAGGTTCCGCTTTGCCTTGCCCACC
GCCCACCACATTCTGGGGCTGCCTGTGGGTAAGCACGTCTACCTCTCTGCCCGAATTGATGGCAGTCTGG
TCATCAGGCCTTACACCCCTGTCACCAGTGATGAAGACCAAGGCTATGTAGATCTTGTCATCAAGGTTTA
TCTGAAAGGTGTGCACCCCAAATTTCCTGAAGGAGGGAAGATGTCTCAATACCTGGATAGCCTGAAGATT
GGGGATATGGTGGAGTTCCGGGGGCCGAGCGGGTTGCTCAGTTATGCTGGGAAAGGGAATTTTAATATTC
AGCCCAACAAAAAATCTCCACCTGAACTGCGAGTGGCGAAGAAATTGGGAATGATTGCTGGTGGGACAGG
AATCACCCCAATGCTGCAGCTGATCCGGGCCATCTTGAAAGTCCCTGAAGATCCAACCCAGTGCTTTCTG
CTTTTTGCCAACCAGACTGAAAGGGATATAATCCTGCGGGAGGACCTAGAGGAACTTCAGGCCCAGTATC
CTAATCGCTTTAAGCTCTGGTTCACTCTGGACTCTCCTCCAGAAGACTGGACCTACAGCAAGGGCTTTGT
TACGGCTGACATGATCCAGGAGCACCTGCCTGCCCCAGCAGAGGATGTGCTGCTGCTGCTCTGTGGACCA
CCACCCATGGTGCAGCTGGCCTGCCACCCTAACTTGGATAAGCTGGGCTATTCACAAAAGATGCGATTCA
CCTACTGA

Translation (305 aa):
MGIQPSPVLLASLGVGLLTLLGLALGTYLVRRSRRPQVTLQDPDEKYLLRLLDKTTVSHNTRRFRFALPT
AHHILGLPVGKHVYLSARIDGSLVIRPYTPVTSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLDSLKI
GDMVEFRGPSGLLSYAGKGNFNIQPNKKSPPELRVAKKLGMIAGGTGITPMLQLIRAILKVPEDPTQCFL
LFANQTERDIILREDLEELQAQYPNRFKLWFTLDSPPEDWTYSKGFVTADMIQEHLPAPAEDVLLLLCGP
PPMVQLACHPNLDKLGYSQKMRFTY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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