NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25460.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25460.1 Public Mus musculus 11 Coa3 23 108 98 CCDS HistoryNCBI Gene:52469Re-query CCDS DB by CCDS ID:25460.1Re-query CCDS DB by GeneID:52469See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25460.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017332.3 ENSMUSP00000017332.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017332.3Link to Ensembl Protein Viewer:ENSMUSP00000017332.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000017332Re-query CCDS DB by Protein ID:ENSMUSP00000017332
Original member Current member NCBI NM_026618.2 NP_080894.1 Accepted alive Link to Nucleotide Sequence:NM_026618.2Link to Protein Sequence:NP_080894.1Re-query CCDS DB by Nucleotide ID:NM_026618Re-query CCDS DB by Protein ID:NP_080894Link to BLAST:NP_080894.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080894.1 108 Q9D2R6 108 100% 0 0

Chromosomal Locations for CCDS 25460.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101278340 101278452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101278714 101278927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (327 nt):
ATGGCGGCCCCTGGAGCTGGTGACCCTCTGAATGCTAAGAATGGAAATGCTCCATTCGCTCAGCGCATCG
ACCCGTCGCGGGAGAAATTGACCCCAGCGCAGTTGCAGTTTATGCGGCAGGTGCAACTTGCCCAGTGGCA
GAAAACACTGCCACAGCGGCGGACCCGGAACATCATGACCGGCCTGGGCATCGGGGCCCTGGTGTTAGCT
ATTTATGGTTACACCTTCTACTCGGTGGCCCAAGAGCGTTTCCTTGATGAGCTGGAAGATGAAGCCAAAG
CTGCCCGAGCCCGTGCTCTTGAGAGAGAGCGAGCTTCGGGACCCTAA

Translation (108 aa):
MAAPGAGDPLNAKNGNAPFAQRIDPSREKLTPAQLQFMRQVQLAQWQKTLPQRRTRNIMTGLGIGALVLA
IYGYTFYSVAQERFLDELEDEAKAARARALERERASGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH