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Report for CCDS48534.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48534.1 Public Mus musculus 10 Rsph4a 23 108 98 CCDS HistoryNCBI Gene:212892Re-query CCDS DB by CCDS ID:48534.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48534.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169670.7 ENSMUSP00000131647.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169670.7Link to Ensembl Protein Viewer:ENSMUSP00000131647.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169670Re-query CCDS DB by Protein ID:ENSMUSP00000131647
Original member Current member NCBI NM_001162957.1 NP_001156429.1 Accepted alive Link to Nucleotide Sequence:NM_001162957.1Link to Protein Sequence:NP_001156429.1Re-query CCDS DB by Nucleotide ID:NM_001162957Re-query CCDS DB by Protein ID:NP_001156429Link to BLAST:NP_001156429.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156429.1 716 Q8BYM7 716 100% 0 0

Chromosomal Locations for CCDS 48534.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 33905156 33905838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33908067 33908301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33909013 33909750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33911506 33911650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33912962 33913079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 33914336 33914567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2151 nt):
ATGGAAAACTCTACCTCTCTGAAACAAGAAAAGGAAAATCAAGAGCCAGGGGAAGCAGAGAGATTATGGC
AAGGAGAGTCAGACGTTTCTCCCCAGGAGCCTGGTCCCCCATCACCTGAGTACCGGGAAGAGGAGCAAAG
GACAGACACCGAACCCGCACCCAGAATGAGCCCCTCTTGGAGCCACCAGTCTAGAGTCAGCCTGTCTACG
GGAGACCTCACCGCTGGACCAGAAGTGTCATCCTCCCCTCCCCCTCCTCCTCTGCAGTTTCATTCCACTC
CTCTCAACACTGAAACTACTCAGGATCCTGTAGCTGCATCACCCACAGAGAAGACCGCTAATGGAATCGC
TGACACCGGGACACCTTATTCTGATCCTTGGGAATCATCTTCTGCTGCAAAGCAATCAACTTCTCACTAC
ACAAGCCACGCCGAGGAAAGTACTTTCCCGCAGTCTCAGACACCCCAACCTGACCTCTGTGGGCTAAGGG
ATGCCAGCAGGAACAAGTCCAAGCACAAAGGGCTGAGATTTGACCTTTTACAAGAGGAAGGCTCAGACAG
TAACTGTGACCCAGACCAGCCTGAGGTTGGAGCCAGTGAAGCAGCCCAGAGTATGCTTGAGGTGGCCATT
CAGAATGCAAAAGCCTACCTGCTGAGTACCAGCAGCAAGTCTGGCTTAAATCTATATGACCATCTTTCTA
AAGTGTTGACCAAGATACTAGATGAGCGTCCTGCAGATGCTGTTGACATCATTGAAAATATAAGCCAAGA
TGTGAAAATGGCACATTTTAATAAAAAATTAGATACACTCCACAATGAATATGAGATGCTTCCAGCATAT
GAAATAGCAGAGACACAAAAGGCACTTTTTCTCCAGGGACATTTGGAAGGTGCTGATTCAGAACTGGAGG
AGGAAATGGCAGAAAGTTCTCTGCCCAATGTGATGGAATCAGCTTATTATTTTGAACAAGCTGGAGTTGG
TTTGGGGACAGATGAGACTTACCGAGTATTCCTCGCCCTCAAGCAACTTACTGATACACACCCAATCCAA
AGATGTCGCTTCTGGGGCAAGATCTTGGGTCTGGAAATGAACTATATTGTTGCTGAAGTGGAATTTCGTG
ATGGTGAAGATGAAGAGGAGGTGGAAGAAGAAGGGATAGCTGAGGAGAGGGACAATGGAGGAAGTGAGGC
CGGTGAAGAGGAGGAGGAGGAATTACCGAAGTCCTTGTATAAGGCCCCACAGGTTATACCTAAGGAAGAA
AGTAGAACGGGTGCCAACAAGTATGTCTATTTTGTTTGCAATGTGCCTGGAAGGCCATGGGTAAGGTTAC
CATCAGTTACACCTGCACAAATTGTCACTGCAAGAAAAATCAAGAAATTTTTCACTGGGCGACTAGATGC
AGCTGTCATAAGCTACCCACCCTTCCCAGGAAATGAGAGCAATTACTTAAGAGCACAAATTGCCCGCATT
TCAGCAGGGACCCATGTCAGTCCTCTAGGATTCTATCAGTTTGGTGAAGAGGAAGGAGAGGAAGAAGAGG
TGGAAGGTGGTCGAGACAGCTATGAGGAAAACCCTGACTTTGAAGGCATCCAAGTGATTGACTTGGTGGA
GTCTCTATCCAATTGGGTTCATCACGTGCAGTATATTCTTCCTCAGGGTCGCTGTAATTGGTTCAACCCT
ATACAAAAAGATGAAGATGAAGAAGAGGAAGAGGAAGAAGATGAAGAAAAGGGGGAAGAACCTGACTACA
TAGAGCAGGAAGTCGGACCTCCTCTTTTGACACCAATATCTGAAGATTTGGGGATTCAGAATATACCCTC
TTGGACAACACAGCTGTCTTCAAATCTCATTCCACAGTATGCCATTGCTGTCCTTCGCTCCAATCTTTGG
CCTGGAGCATATGCTTTTTCCAATGGCAAGAAGTTTGAAAACTTCTACATAGGCTGGGGTCATAAGTACT
GTGTGGAGAATTACACACCCCCAAGCCCACCACCAGTTTATCAAGAATATCCCAGTGGACCAGAAATTAC
AGAAATGAATGATCCCAGTGTGGAGGAGGAACAGGCTTTCAGGATGACACAAGAGCCAGTTGCACTTTCA
ACTGAGGAGAACGAAGGAACTGAAGATGAAGATGAGGACGATGAGGACTAA

Translation (716 aa):
MENSTSLKQEKENQEPGEAERLWQGESDVSPQEPGPPSPEYREEEQRTDTEPAPRMSPSWSHQSRVSLST
GDLTAGPEVSSSPPPPPLQFHSTPLNTETTQDPVAASPTEKTANGIADTGTPYSDPWESSSAAKQSTSHY
TSHAEESTFPQSQTPQPDLCGLRDASRNKSKHKGLRFDLLQEEGSDSNCDPDQPEVGASEAAQSMLEVAI
QNAKAYLLSTSSKSGLNLYDHLSKVLTKILDERPADAVDIIENISQDVKMAHFNKKLDTLHNEYEMLPAY
EIAETQKALFLQGHLEGADSELEEEMAESSLPNVMESAYYFEQAGVGLGTDETYRVFLALKQLTDTHPIQ
RCRFWGKILGLEMNYIVAEVEFRDGEDEEEVEEEGIAEERDNGGSEAGEEEEEELPKSLYKAPQVIPKEE
SRTGANKYVYFVCNVPGRPWVRLPSVTPAQIVTARKIKKFFTGRLDAAVISYPPFPGNESNYLRAQIARI
SAGTHVSPLGFYQFGEEEGEEEEVEGGRDSYEENPDFEGIQVIDLVESLSNWVHHVQYILPQGRCNWFNP
IQKDEDEEEEEEEDEEKGEEPDYIEQEVGPPLLTPISEDLGIQNIPSWTTQLSSNLIPQYAIAVLRSNLW
PGAYAFSNGKKFENFYIGWGHKYCVENYTPPSPPPVYQEYPSGPEITEMNDPSVEEEQAFRMTQEPVALS
TEENEGTEDEDEDDED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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