NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS33192.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33192.1 Public Homo sapiens 2 MCFD2 24 110 108 CCDS HistoryNCBI Gene:90411Re-query CCDS DB by CCDS ID:33192.1Re-query CCDS DB by GeneID:90411See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33192.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319466.9 ENSP00000317271.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000319466.9Link to Ensembl Protein Viewer:ENSP00000317271.4Re-query CCDS DB by Nucleotide ID:ENST00000319466Re-query CCDS DB by Protein ID:ENSP00000317271
Original member Current member EBI ENST00000409218.5 ENSP00000386261.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409218.5Link to Ensembl Protein Viewer:ENSP00000386261.1Re-query CCDS DB by Nucleotide ID:ENST00000409218Re-query CCDS DB by Protein ID:ENSP00000386261
Original member Current member EBI ENST00000409973.5 ENSP00000386279.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409973.5Link to Ensembl Protein Viewer:ENSP00000386279.1Re-query CCDS DB by Nucleotide ID:ENST00000409973Re-query CCDS DB by Protein ID:ENSP00000386279
Original member Current member EBI ENST00000409207.5 ENSP00000386386.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409207.5Link to Ensembl Protein Viewer:ENSP00000386386.1Re-query CCDS DB by Nucleotide ID:ENST00000409207Re-query CCDS DB by Protein ID:ENSP00000386386
Original member Current member EBI ENST00000409105.5 ENSP00000386651.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409105.5Link to Ensembl Protein Viewer:ENSP00000386651.1Re-query CCDS DB by Nucleotide ID:ENST00000409105Re-query CCDS DB by Protein ID:ENSP00000386651
Original member Current member NCBI NM_001171506.2 NP_001164977.1 Accepted alive Link to Nucleotide Sequence:NM_001171506.2Link to Protein Sequence:NP_001164977.1Re-query CCDS DB by Nucleotide ID:NM_001171506Re-query CCDS DB by Protein ID:NP_001164977Link to BLAST:NP_001164977.1
Original member Current member NCBI NM_001171507.2 NP_001164978.1 Accepted alive Link to Nucleotide Sequence:NM_001171507.2Link to Protein Sequence:NP_001164978.1Re-query CCDS DB by Nucleotide ID:NM_001171507Re-query CCDS DB by Protein ID:NP_001164978Link to BLAST:NP_001164978.1
Original member Current member NCBI NM_001171508.2 NP_001164979.1 Accepted alive Link to Nucleotide Sequence:NM_001171508.2Link to Protein Sequence:NP_001164979.1Re-query CCDS DB by Nucleotide ID:NM_001171508Re-query CCDS DB by Protein ID:NP_001164979Link to BLAST:NP_001164979.1
Original member Current member NCBI NM_139279.6 NP_644808.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_139279.6Link to Protein Sequence:NP_644808.1Re-query CCDS DB by Nucleotide ID:NM_139279Re-query CCDS DB by Protein ID:NP_644808Link to BLAST:NP_644808.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164977.1 146 Q8NI22-1 146 100% 0 0
NP_001164978.1 146 Q8NI22-1 146 100% 0 0
NP_001164979.1 146 Q8NI22-1 146 100% 0 0
NP_644808.1 146 Q8NI22-1 146 100% 0 0

Chromosomal Locations for CCDS 33192.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 46905463 46905594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 46907810 46907969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 46909023 46909171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (441 nt):
ATGACCATGAGATCCCTGCTCAGAACCCCCTTCCTGTGTGGCCTGCTCTGGGCCTTTTGTGCCCCAGGCG
CCAGGGCTGAGGAGCCTGCAGCCAGCTTCTCCCAACCCGGCAGCATGGGCCTGGATAAGAACACAGTGCA
CGACCAAGAGCATATCATGGAGCATCTAGAAGGTGTCATCAACAAACCAGAGGCGGAGATGTCGCCACAA
GAATTGCAGCTCCATTACTTCAAAATGCATGATTATGATGGCAATAATTTGCTTGATGGCTTAGAACTCT
CCACAGCCATCACTCATGTCCATAAGGAGGAAGGGAGTGAACAGGCACCACTAATGAGTGAAGATGAACT
GATTAACATAATAGATGGTGTTTTGAGAGATGATGACAAGAACAATGATGGATACATTGACTATGCTGAA
TTTGCAAAATCACTGCAGTAG

Translation (146 aa):
MTMRSLLRTPFLCGLLWAFCAPGARAEEPAASFSQPGSMGLDKNTVHDQEHIMEHLEGVINKPEAEMSPQ
ELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDYAE
FAKSLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH