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Report for CCDS23219.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23219.1 Public Mus musculus 9 1700017B05Rik 23 108 98 CCDS HistoryNCBI Gene:74211Re-query CCDS DB by CCDS ID:23219.1Re-query CCDS DB by GeneID:74211See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23219.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034846.6 ENSMUSP00000034846.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034846.6Link to Ensembl Protein Viewer:ENSMUSP00000034846.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034846Re-query CCDS DB by Protein ID:ENSMUSP00000034846
Original member Current member NCBI NM_028820.2 NP_083096.1 Accepted alive Link to Nucleotide Sequence:NM_028820.2Link to Protein Sequence:NP_083096.1Re-query CCDS DB by Nucleotide ID:NM_028820Re-query CCDS DB by Protein ID:NP_083096Link to BLAST:NP_083096.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083096.1 1023 Q3TEI4-1 1023 100% 0 0

Chromosomal Locations for CCDS 23219.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 57253962 57254329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57256386 57259089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3072 nt):
ATGGCAGAGAAGCGGCCCCTAGGGCCTCTGGGGCCTATGATGTATGGCAAGCTGCCTCGCCTGGAGCCAG
ACCCAGGGCCAGGACACAGCCTGCCCCTTTCTGCTAGCAGCCAGGACTCCTGCAATTACAAAGGTGCATA
TTTCTCCTGCCCCATAGGGGGTACTTCGAAGGCAGGATCTGAGCGGTTGGCATCCTGGACCCCATATCCA
TCTTTGTACCCCACTGGTGTGGCAGGATCCCCACTCCGGGGTGACAACCTACTGACAAACTGCCTGCTCT
ACCGTCCCCCGACAGAAGGCTCTGAAAAGATACAAGACTCAAGTGAGCTGCTGCCCTTCGGTCCCCAGGC
TCATGCGTACCCAGGCCCGCCCCTGGCCGCGCCCAAGCCTGTCTACCGCAACCCTTTGTGTTACGGACTC
TCCACTTGCCTCGGAGATGGGGGAACAAAGAGATCATTGGATGGTGACTGGACCCTGGTGACAGGGCCCC
TGCTGCCTTCTGCTGACCCACCCTGTCCTCTAGCTACAGCTCCTGGCAAGGGCCAGCCCCTGGATGGGAC
GTTCTTGCGAGGACTACCATCTGGGGGACCTGGCAAGGACTCTTCCCTGCCTTTTTCCCCGTGCCAGGCA
TTCTTGGAGAAGTATCGAACTATCCAAAGCACAGGTTTCCTGGCTTCCAAGTACACCAGTCCTTATCCTG
GGGATGCAAAGCAAGCAATGTCTGAGGGGCCCTCCAGTCCTTGGACTCAACTTGCACAGCCCCTAGGGCC
ACCTTGCCAGGATGCAGTGGCAGCCCACTATCCACTGCCCCCACCGCCACAGGCCCTGCCTTGCCCTCCA
TCTTGTCATCCAGAAAAGCAGGGAAGCTATGGCTCGTTGCTCCCACTGCCACCTCTAGGAGCCCACAAGG
GGGCTGCGTACCAAGCTGGGGGGCTGGGCAGCCCTTACCTGAGGCAACAGGCACCCCAGGCTCCGTACAT
GCCCCCTCTTGGGATAGACAGTTATTCCTACTCCTCTGCACCCCTCCCAGCACCATCACCAGGGCTCAAA
CTGGAGCCCCCTCTTGCTCCAAGGTGCCCACTGGACTTTGTTCCCCAAACTCTGGGTTTTCCTTATGCCA
GGGATGACCTCTCTCTCTATGGGGCATCCCCGGGGCTTGGGGGAACACCGCCTTCCCATTCCCAGAACAG
TGTGCAGCCTGTGCCACAGCCCGGTGCCTTCCAGCGAGCATGCCAGCCTTTGCCAGCCAGCCAACCCTGC
TCTGAGCCTGTGAGACCTGCAGAGAAGCCAACTCCAGAAGCTCAAGAGAAGATGTGGCTGCCCAGCTGCA
GGAAAGAGCAACTCCAGCCCAGGCCAAACGAGCGTCCTGGAGTGCCTATTGTTATCCGGGACAGTCCAGT
TCCCCGCACCTCACCAGCACTGCACCCCTGTGCCAAGGAGCGGCAGTCTGTCCCACAGAAGGATGCCAGG
CCTCCCAGCTCCCCACCAATGCCCGTGATTGACAACGTTTTTAGTCTGGCCCCTTACCGTGACTACCTGG
ATGTGCAGACACCAGAGCCCAGGGCTGAGCGGGACTCGGCTCCAGCCACCAGTAAGAGCCAAGACAAAGA
TTGCAAGGGGAACCTGCCTGCTCAGGATGGAGCCTCCAGGTCTCACTGCTCTCTTCGTGAGGAGGTGGCT
CTGGACTTGAGTGTTAAAAAGACGATGGCAGAGGGTGTCCCTGTCAAGGTCCCCAGTCCTGAGGTGCATG
AAAAGCCCGCTGAAGCTGTGGATGGGCCAGGTATAGAAAACACAGTGTCAGGTCTGCCTGGCCTAAAAAA
GATGGTCACAGAAATCCCTGAAGTAACTGCAGAAGCCACACCAAGGACCAACTTCCATAGCTCTGTGGCC
TTCATGTTCCGAAAATTCAAGATACTCCGTACTGCGCCCGTACCTGCAGCTATTGTCTCATCTCCCACTA
CCCCGGCTCCTGTCCCTGCGCCTGCCCCTGCACAGCCTGTACCCAACCCCCCGTCTGTGCCAGTGGGACT
GCAGATCCTCACTCAGCCTTTGCCAGTGGCATGCTTCAACCTGGCCCTGCCTAGCCCACCAGCCATAGTG
GCCTCCCCGGCCCCAGCCTCTGCTCCACCTCCATCACCAGCTCCTGCTCCTGCTCCAGCCTCGGGTCCTG
CTCCATCGTCTGCTCAAGTTCCCACTGCAGCCCCAGTGGACTCCCCGGAACAGCACTTCACAGGGCTGCA
CACATCCCTCTGTGATGCCATCTCAGGCTCTGTGGCCCATTCTCCACCAGAGAAACTGCGGGAGTGGCTT
GAGACAACTGGGCCGTGGGGCCAGGCTGCGTGGCAGGACTGCCAGGGTGTTCAGGGGCTACTAGGCAAAC
TGCTGTCCCAGCTGCAGAAGTTCGTGTGCACACAGCGGTGCCCCTTCCCTCATGTAGTACGGGCTGGTGC
CATCTTTGTGCCCATCCATCTGGTGAAGGAGCGTCTCTTTCCAAAGCTGCCACCGGCCTCTGTGGACCAC
GTGTTGCAGGACCACCGAGTGGAACTACGGCCCACCACTCTGTCGGAGGAGCGTGCGCTGCGTGAACGTG
CCCTGCACGGCTGCACCTCGCGCATGCTGAAGCTGCTGGCACTGCGTCAGCTGCCTGACATCTATCCTGA
CCTGCTGGGCCTACAGTGGCATGACTGTGTCCGCCGCCAGCTGGGTGGCTTTGACACTGAGGCCAGAACT
TTATCCCCATCAGAACCCACGGTCACCAGAGATGAGCCAGAAAGCCAAGCCTTGGCTGGAAAGTTGCCAG
CCCCCAAGGTCAAGAAGCCAGGGAGGAAGCCACCGACGCCTGGCCCTGAGAAAGCAGAGGCAGCCACTGG
GGAAGGGTCACGTAATCCCTCACCTAGCTCTGGTGCCAGCACCAGCCCACCAGGTCCCACCCTGAGGGCC
CGCTTCCGCAACCTGTTAGAAAATGCCTGGCTCAATGGTGTGGCACTGCCTACTTGGGGTCACAAGGCCT
CCGGAGCAGATCGATCTTCGCCTCACCCCCAGCTCTTGGGCAGCCAGACCCATCATCTGTAG

Translation (1023 aa):
MAEKRPLGPLGPMMYGKLPRLEPDPGPGHSLPLSASSQDSCNYKGAYFSCPIGGTSKAGSERLASWTPYP
SLYPTGVAGSPLRGDNLLTNCLLYRPPTEGSEKIQDSSELLPFGPQAHAYPGPPLAAPKPVYRNPLCYGL
STCLGDGGTKRSLDGDWTLVTGPLLPSADPPCPLATAPGKGQPLDGTFLRGLPSGGPGKDSSLPFSPCQA
FLEKYRTIQSTGFLASKYTSPYPGDAKQAMSEGPSSPWTQLAQPLGPPCQDAVAAHYPLPPPPQALPCPP
SCHPEKQGSYGSLLPLPPLGAHKGAAYQAGGLGSPYLRQQAPQAPYMPPLGIDSYSYSSAPLPAPSPGLK
LEPPLAPRCPLDFVPQTLGFPYARDDLSLYGASPGLGGTPPSHSQNSVQPVPQPGAFQRACQPLPASQPC
SEPVRPAEKPTPEAQEKMWLPSCRKEQLQPRPNERPGVPIVIRDSPVPRTSPALHPCAKERQSVPQKDAR
PPSSPPMPVIDNVFSLAPYRDYLDVQTPEPRAERDSAPATSKSQDKDCKGNLPAQDGASRSHCSLREEVA
LDLSVKKTMAEGVPVKVPSPEVHEKPAEAVDGPGIENTVSGLPGLKKMVTEIPEVTAEATPRTNFHSSVA
FMFRKFKILRTAPVPAAIVSSPTTPAPVPAPAPAQPVPNPPSVPVGLQILTQPLPVACFNLALPSPPAIV
ASPAPASAPPPSPAPAPAPASGPAPSSAQVPTAAPVDSPEQHFTGLHTSLCDAISGSVAHSPPEKLREWL
ETTGPWGQAAWQDCQGVQGLLGKLLSQLQKFVCTQRCPFPHVVRAGAIFVPIHLVKERLFPKLPPASVDH
VLQDHRVELRPTTLSEERALRERALHGCTSRMLKLLALRQLPDIYPDLLGLQWHDCVRRQLGGFDTEART
LSPSEPTVTRDEPESQALAGKLPAPKVKKPGRKPPTPGPEKAEAATGEGSRNPSPSSGASTSPPGPTLRA
RFRNLLENAWLNGVALPTWGHKASGADRSSPHPQLLGSQTHHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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