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Report for CCDS4104.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4104.1 Public Homo sapiens 5 STARD4 24 110 108 CCDS HistoryNCBI Gene:134429Re-query CCDS DB by CCDS ID:4104.1Re-query CCDS DB by GeneID:134429See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4104.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296632.8 ENSP00000296632.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296632.8Link to Ensembl Protein Viewer:ENSP00000296632.3Re-query CCDS DB by Nucleotide ID:ENST00000296632Re-query CCDS DB by Protein ID:ENSP00000296632
Original member Current member EBI ENST00000505803.5 ENSP00000427478.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000505803.5Link to Ensembl Protein Viewer:ENSP00000427478.2Re-query CCDS DB by Nucleotide ID:ENST00000505803Re-query CCDS DB by Protein ID:ENSP00000427478
Original member Current member NCBI NM_001308056.2 NP_001294985.1 Accepted alive Link to Nucleotide Sequence:NM_001308056.2Link to Protein Sequence:NP_001294985.1Re-query CCDS DB by Nucleotide ID:NM_001308056Re-query CCDS DB by Protein ID:NP_001294985Link to BLAST:NP_001294985.1
Original member Current member NCBI NM_139164.3 NP_631903.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_139164.3Link to Protein Sequence:NP_631903.1Re-query CCDS DB by Nucleotide ID:NM_139164Re-query CCDS DB by Protein ID:NP_631903Link to BLAST:NP_631903.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001294985.1 205 Q96DR4-1 205 100% 0 0
NP_631903.1 205 Q96DR4-1 205 100% 0 0

Chromosomal Locations for CCDS 4104.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 111499886 111500106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 111501002 111501116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 111501962 111502088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 111506330 111506379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 111507329 111507433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGGAAGGCCTGTCTGATGTTGCTTCTTTTGCAACTAAACTTAAAAACACTCTCATCCAGTACCATAGCA
TTGAAGAAGATAAGTGGCGAGTTGCTAAGAAAACGAAAGATGTAACTGTTTGGAGAAAACCCTCAGAAGA
ATTTAATGGATATCTCTACAAAGCCCAAGGTGTTATAGATGACCTTGTCTATAGTATAATAGACCATATA
CGCCCAGGGCCTTGTCGTTTGGATTGGGACAGCTTGATGACTTCTTTGGATATTCTGGAGAACTTTGAAG
AGAATTGCTGTGTGATGCGTTACACTACTGCTGGTCAGCTTTGGAATATAATTTCCCCAAGAGAATTTGT
TGATTTCTCCTATACTGTGGGCTATAAAGAAGGGCTTTTATCTTGTGGAATAAGTCTTGACTGGGATGAA
AAGAGACCAGAATTTGTTCGAGGATATAACCATCCCTGTGGTTGGTTTTGTGTTCCACTTAAAGACAACC
CAAACCAGAGTCTTTTGACAGGATATATTCAGACAGATCTGCGTGGGATGATTCCTCAGTCTGCGGTAGA
TACAGCCATGGCAAGCACTTTAACCAACTTCTATGGTGATTTACGAAAAGCTTTATGA

Translation (205 aa):
MEGLSDVASFATKLKNTLIQYHSIEEDKWRVAKKTKDVTVWRKPSEEFNGYLYKAQGVIDDLVYSIIDHI
RPGPCRLDWDSLMTSLDILENFEENCCVMRYTTAGQLWNIISPREFVDFSYTVGYKEGLLSCGISLDWDE
KRPEFVRGYNHPCGWFCVPLKDNPNQSLLTGYIQTDLRGMIPQSAVDTAMASTLTNFYGDLRKAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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