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Report for CCDS12369.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12369.1 Public Homo sapiens 19 CCDC124 24 110 108 CCDS HistoryNCBI Gene:115098Re-query CCDS DB by CCDS ID:12369.1Re-query CCDS DB by GeneID:115098See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12369.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000445755.7 ENSP00000408730.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000445755.7Link to Ensembl Protein Viewer:ENSP00000408730.1Re-query CCDS DB by Nucleotide ID:ENST00000445755Re-query CCDS DB by Protein ID:ENSP00000408730
Original member Current member EBI ENST00000597436.5 ENSP00000471455.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000597436.5Link to Ensembl Protein Viewer:ENSP00000471455.1Re-query CCDS DB by Nucleotide ID:ENST00000597436Re-query CCDS DB by Protein ID:ENSP00000471455
Original member Current member NCBI NM_001136203.2 NP_001129675.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001136203.2Link to Protein Sequence:NP_001129675.1Re-query CCDS DB by Nucleotide ID:NM_001136203Re-query CCDS DB by Protein ID:NP_001129675Link to BLAST:NP_001129675.1
Original member Current member NCBI NM_138442.4 NP_612451.1 Accepted alive Link to Nucleotide Sequence:NM_138442.4Link to Protein Sequence:NP_612451.1Re-query CCDS DB by Nucleotide ID:NM_138442Re-query CCDS DB by Protein ID:NP_612451Link to BLAST:NP_612451.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129675.1 223 Q96CT7 223 100% 0 0
NP_612451.1 223 Q96CT7 223 100% 0 0

Chromosomal Locations for CCDS 12369.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 17936421 17936579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17942656 17942845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17943261 17943375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17943508 17943715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (672 nt):
ATGCCCAAGAAGTTCCAGGGTGAGAACACCAAGTCGGCAGCGGCCCGGGCACGTAGGGCAGAGGCCAAGG
CGGCCGCTGATGCCAAGAAGCAGAAGGAGCTGGAGGATGCCTACTGGAAGGACGACGACAAACACGTCAT
GAGGAAGGAGCAGCGCAAGGAGGAGAAGGAGAAGCGGCGCCTCGACCAGCTGGAACGTAAGAAGGAGACG
CAGCGCCTACTGGAGGAGGAGGACTCCAAGCTCAAGGGCGGCAAGGCGCCGCGGGTGGCCACGTCCAGCA
AGGTCACCCGGGCCCAGATCGAGGACACGCTGCGCCGAGACCATCAGCTCAGGGAGGCCCCGGACACAGC
CGAGAAAGCCAAGAGCCATCTGGAGGTGCCGCTGGAGGAGAACGTGAACCGCCGCGTGCTGGAGGAGGGC
AGCGTGGAGGCGCGCACCATCGAGGACGCCATTGCAGTGCTCAGCGTGGCGGAGGAGGCGGCCGACCGGC
ACCCAGAAAGACGCATGCGGGCAGCCTTCACAGCCTTTGAGGAAGCCCAGCTGCCGCGGCTCAAACAAGA
GAACCCCAACATGCGGCTGTCGCAGCTGAAACAGCTGCTCAAGAAGGAGTGGCTCCGCTCTCCTGACAAC
CCCATGAACCAGCGGGCCGTGCCCTTCAATGCCCCCAAGTGA

Translation (223 aa):
MPKKFQGENTKSAAARARRAEAKAAADAKKQKELEDAYWKDDDKHVMRKEQRKEEKEKRRLDQLERKKET
QRLLEEEDSKLKGGKAPRVATSSKVTRAQIEDTLRRDHQLREAPDTAEKAKSHLEVPLEENVNRRVLEEG
SVEARTIEDAIAVLSVAEEAADRHPERRMRAAFTAFEEAQLPRLKQENPNMRLSQLKQLLKKEWLRSPDN
PMNQRAVPFNAPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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