NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1547.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1547.1 Public Homo sapiens 1 EPHX1 24 110 108 CCDS HistoryNCBI Gene:2052Re-query CCDS DB by CCDS ID:1547.1Re-query CCDS DB by GeneID:2052See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1547.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000272167.10 ENSP00000272167.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000272167.10Link to Ensembl Protein Viewer:ENSP00000272167.5Re-query CCDS DB by Nucleotide ID:ENST00000272167Re-query CCDS DB by Protein ID:ENSP00000272167
Original member Current member EBI ENST00000366837.5 ENSP00000355802.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366837.5Link to Ensembl Protein Viewer:ENSP00000355802.4Re-query CCDS DB by Nucleotide ID:ENST00000366837Re-query CCDS DB by Protein ID:ENSP00000355802
Original member Current member EBI ENST00000614058.4 ENSP00000480004.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614058.4Link to Ensembl Protein Viewer:ENSP00000480004.1Re-query CCDS DB by Nucleotide ID:ENST00000614058Re-query CCDS DB by Protein ID:ENSP00000480004
Original member Current member NCBI NM_000120.4 NP_000111.1 Accepted alive Link to Nucleotide Sequence:NM_000120.4Link to Protein Sequence:NP_000111.1Re-query CCDS DB by Nucleotide ID:NM_000120Re-query CCDS DB by Protein ID:NP_000111Link to BLAST:NP_000111.1
Original member Current member NCBI NM_001136018.4 NP_001129490.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001136018.4Link to Protein Sequence:NP_001129490.1Re-query CCDS DB by Nucleotide ID:NM_001136018Re-query CCDS DB by Protein ID:NP_001129490Link to BLAST:NP_001129490.1
Original member Current member NCBI NM_001291163.2 NP_001278092.1 Accepted alive Link to Nucleotide Sequence:NM_001291163.2Link to Protein Sequence:NP_001278092.1Re-query CCDS DB by Nucleotide ID:NM_001291163Re-query CCDS DB by Protein ID:NP_001278092Link to BLAST:NP_001278092.1
Original member Current member NCBI NM_001378426.1 NP_001365355.1 Accepted alive Link to Nucleotide Sequence:NM_001378426.1Link to Protein Sequence:NP_001365355.1Re-query CCDS DB by Nucleotide ID:NM_001378426Re-query CCDS DB by Protein ID:NP_001365355Link to BLAST:NP_001365355.1
Original member Current member NCBI NM_001378427.1 NP_001365356.1 Accepted alive Link to Nucleotide Sequence:NM_001378427.1Link to Protein Sequence:NP_001365356.1Re-query CCDS DB by Nucleotide ID:NM_001378427Re-query CCDS DB by Protein ID:NP_001365356Link to BLAST:NP_001365356.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000111.1 455 P07099 455 100% 0 0
NP_001129490.1 455 P07099 455 100% 0 0
NP_001278092.1 455 P07099 455 100% 0 0
NP_001365355.1 455 P07099 455 100% 0 0
NP_001365356.1 455 P07099 455 100% 0 0

Chromosomal Locations for CCDS 1547.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 225828730 225828912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 225831779 225831959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 225838654 225838881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 225839217 225839346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 225839829 225840037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 225842366 225842474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 225844498 225844623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 225845146 225845347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1368 nt):
ATGTGGCTAGAAATCCTCCTCACTTCAGTGCTGGGCTTTGCCATCTACTGGTTCATCTCCCGGGACAAAG
AGGAAACTTTGCCACTTGAAGATGGGTGGTGGGGGCCAGGCACGAGGTCCGCAGCCAGGGAGGACGACAG
CATCCGCCCTTTCAAGGTGGAAACGTCAGATGAGGAGATCCACGACTTACACCAGAGGATCGATAAGTTC
CGTTTCACCCCACCTTTGGAGGACAGCTGCTTCCACTATGGCTTCAACTCCAACTACCTGAAGAAAGTCA
TCTCCTACTGGCGGAATGAATTTGACTGGAAGAAGCAGGTGGAGATTCTCAACAGATACCCTCACTTCAA
GACTAAGATTGAAGGGCTGGACATCCACTTCATCCACGTGAAGCCCCCCCAGCTGCCCGCAGGCCATACC
CCGAAGCCCTTGCTGATGGTGCACGGCTGGCCCGGCTCTTTCTACGAGTTTTATAAGATCATCCCACTCC
TGACTGACCCCAAGAACCATGGCCTGAGCGATGAGCACGTTTTTGAAGTCATCTGCCCTTCCATCCCTGG
CTATGGCTTCTCAGAGGCATCCTCCAAGAAGGGGTTCAACTCGGTGGCCACCGCCAGGATCTTTTACAAG
CTGATGCTGCGGCTGGGCTTCCAGGAATTCTACATTCAAGGAGGGGACTGGGGGTCCCTGATCTGCACTA
ATATGGCCCAGCTGGTGCCCAGCCACGTGAAAGGCCTGCACTTGAACATGGCTTTGGTTTTAAGCAACTT
CTCTACCCTGACCCTCCTCCTGGGACAGCGTTTCGGGAGGTTTCTTGGCCTCACTGAGAGGGATGTGGAG
CTGCTGTACCCCGTCAAGGAGAAGGTATTCTACAGCCTGATGAGGGAGAGCGGCTACATGCACATCCAGT
GCACCAAGCCTGACACCGTAGGCTCTGCTCTGAATGACTCTCCTGTGGGTCTGGCTGCCTATATTCTAGA
GAAGTTTTCCACCTGGACCAATACGGAATTCCGATACCTGGAGGATGGAGGCCTGGAAAGGAAGTTCTCC
CTGGACGACCTGCTGACCAACGTCATGCTCTACTGGACAACAGGCACCATCATCTCCTCCCAGCGCTTCT
ACAAGGAGAACCTGGGACAGGGCTGGATGACCCAGAAGCATGAGCGGATGAAGGTCTATGTGCCCACTGG
CTTCTCTGCCTTCCCTTTTGAGCTATTGCACACGCCTGAAAAGTGGGTGAGGTTCAAGTACCCAAAGCTC
ATCTCCTATTCCTACATGGTTCGTGGGGGCCACTTTGCGGCCTTTGAGGAGCCGGAGCTGCTCGCCCAGG
ACATCCGCAAGTTCCTGTCGGTGCTGGAGCGGCAATGA

Translation (455 aa):
MWLEILLTSVLGFAIYWFISRDKEETLPLEDGWWGPGTRSAAREDDSIRPFKVETSDEEIHDLHQRIDKF
RFTPPLEDSCFHYGFNSNYLKKVISYWRNEFDWKKQVEILNRYPHFKTKIEGLDIHFIHVKPPQLPAGHT
PKPLLMVHGWPGSFYEFYKIIPLLTDPKNHGLSDEHVFEVICPSIPGYGFSEASSKKGFNSVATARIFYK
LMLRLGFQEFYIQGGDWGSLICTNMAQLVPSHVKGLHLNMALVLSNFSTLTLLLGQRFGRFLGLTERDVE
LLYPVKEKVFYSLMRESGYMHIQCTKPDTVGSALNDSPVGLAAYILEKFSTWTNTEFRYLEDGGLERKFS
LDDLLTNVMLYWTTGTIISSQRFYKENLGQGWMTQKHERMKVYVPTGFSAFPFELLHTPEKWVRFKYPKL
ISYSYMVRGGHFAAFEEPELLAQDIRKFLSVLERQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH