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Report for CCDS8723.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8723.1 Public Homo sapiens 12 SINHCAF 24 110 108 CCDS HistoryNCBI Gene:58516Re-query CCDS DB by CCDS ID:8723.1Re-query CCDS DB by GeneID:58516See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8723.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337682.9 ENSP00000337477.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000337682.9Link to Ensembl Protein Viewer:ENSP00000337477.4Re-query CCDS DB by Nucleotide ID:ENST00000337682Re-query CCDS DB by Protein ID:ENSP00000337477
Original member Current member EBI ENST00000454658.6 ENSP00000393279.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000454658.6Link to Ensembl Protein Viewer:ENSP00000393279.2Re-query CCDS DB by Nucleotide ID:ENST00000454658Re-query CCDS DB by Protein ID:ENSP00000393279
Original member Current member NCBI NM_001135811.2 NP_001129283.1 Accepted alive Link to Nucleotide Sequence:NM_001135811.2Link to Protein Sequence:NP_001129283.1Re-query CCDS DB by Nucleotide ID:NM_001135811Re-query CCDS DB by Protein ID:NP_001129283Link to BLAST:NP_001129283.1
Original member Current member NCBI NM_001135812.2 NP_001129284.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001135812.2Link to Protein Sequence:NP_001129284.1Re-query CCDS DB by Nucleotide ID:NM_001135812Re-query CCDS DB by Protein ID:NP_001129284Link to BLAST:NP_001129284.1
Original member Current member NCBI NM_021238.3 NP_067061.1 Accepted alive Link to Nucleotide Sequence:NM_021238.3Link to Protein Sequence:NP_067061.1Re-query CCDS DB by Nucleotide ID:NM_021238Re-query CCDS DB by Protein ID:NP_067061Link to BLAST:NP_067061.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129283.1 221 Q9NP50-1 221 100% 0 0
NP_001129284.1 221 Q9NP50-1 221 100% 0 0
NP_067061.1 221 Q9NP50-1 221 100% 0 0

Chromosomal Locations for CCDS 8723.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 31282712 31282871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31287634 31287784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31293805 31293931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31295234 31295333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31298077 31298204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGTTTGGTTTTCACAAGCCAAAGATGTACCGAAGTATAGAGGGCTGCTGTATTTGCAGAGCTAAGTCCT
CCAGTTCTCGATTCACTGACAGTAAACGCTATGAAAAGGACTTCCAGAGCTGTTTTGGATTGCATGAGAC
TCGTTCAGGAGACATCTGCAATGCCTGTGTCCTGCTTGTGAAAAGATGGAAGAAGTTGCCAGCAGGATCA
AAAAAAAACTGGAATCATGTGGTAGATGCAAGGGCTGGACCCAGTCTAAAGACTACATTGAAACCAAAGA
AAGTGAAAACTCTATCTGGGAACAGGATAAAAAGCAACCAGATCAGTAAACTGCAGAAGGAATTTAAACG
TCATAATTCTGATGCTCACAGTACCACCTCAAGTGCCTCCCCAGCTCAATCTCCTTGTTACAGTAACCAG
TCAGATGACGGCTCAGATACAGAGATGGCTTCTGGTTCTAACAGAACACCAGTTTTTTCCTTTTTAGATC
TCACTTACTGGAAAAGACAGAAGATATGTTGTGGGATCATCTATAAAGGCCGTTTTGGGGAAGTCCTCAT
TGACACACATCTCTTCAAGCCTTGCTGCAGCAATAAGAAAGCAGCTGCTGAGAAGCCAGAGGAGCAGGGG
CCAGAGCCTCTGCCCATCTCCACTCAGGAGTGGTGA

Translation (221 aa):
MFGFHKPKMYRSIEGCCICRAKSSSSRFTDSKRYEKDFQSCFGLHETRSGDICNACVLLVKRWKKLPAGS
KKNWNHVVDARAGPSLKTTLKPKKVKTLSGNRIKSNQISKLQKEFKRHNSDAHSTTSSASPAQSPCYSNQ
SDDGSDTEMASGSNRTPVFSFLDLTYWKRQKICCGIIYKGRFGEVLIDTHLFKPCCSNKKAAAEKPEEQG
PEPLPISTQEW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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