NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9017.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9017.1 Public Homo sapiens 12 SYT1 24 110 108 CCDS HistoryNCBI Gene:6857Re-query CCDS DB by CCDS ID:9017.1Re-query CCDS DB by GeneID:6857See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9017.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261205.9 ENSP00000261205.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261205.9Link to Ensembl Protein Viewer:ENSP00000261205.4Re-query CCDS DB by Nucleotide ID:ENST00000261205Re-query CCDS DB by Protein ID:ENSP00000261205
Original member Current member EBI ENST00000393240.7 ENSP00000376932.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393240.7Link to Ensembl Protein Viewer:ENSP00000376932.3Re-query CCDS DB by Nucleotide ID:ENST00000393240Re-query CCDS DB by Protein ID:ENSP00000376932
Original member Current member EBI ENST00000552744.5 ENSP00000447575.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000552744.5Link to Ensembl Protein Viewer:ENSP00000447575.1Re-query CCDS DB by Nucleotide ID:ENST00000552744Re-query CCDS DB by Protein ID:ENSP00000447575
Original member Current member EBI ENST00000704696.1 ENSP00000515993.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704696.1Link to Ensembl Protein Viewer:ENSP00000515993.1Re-query CCDS DB by Nucleotide ID:ENST00000704696Re-query CCDS DB by Protein ID:ENSP00000515993
Original member Current member EBI ENST00000704700.1 ENSP00000515997.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704700.1Link to Ensembl Protein Viewer:ENSP00000515997.1Re-query CCDS DB by Nucleotide ID:ENST00000704700Re-query CCDS DB by Protein ID:ENSP00000515997
Original member Current member EBI ENST00000704702.1 ENSP00000515999.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704702.1Link to Ensembl Protein Viewer:ENSP00000515999.1Re-query CCDS DB by Nucleotide ID:ENST00000704702Re-query CCDS DB by Protein ID:ENSP00000515999
Original member Current member EBI ENST00000704704.1 ENSP00000516001.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704704.1Link to Ensembl Protein Viewer:ENSP00000516001.1Re-query CCDS DB by Nucleotide ID:ENST00000704704Re-query CCDS DB by Protein ID:ENSP00000516001
Original member Current member EBI ENST00000704705.1 ENSP00000516002.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704705.1Link to Ensembl Protein Viewer:ENSP00000516002.1Re-query CCDS DB by Nucleotide ID:ENST00000704705Re-query CCDS DB by Protein ID:ENSP00000516002
Original member Current member EBI ENST00000704706.1 ENSP00000516003.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704706.1Link to Ensembl Protein Viewer:ENSP00000516003.1Re-query CCDS DB by Nucleotide ID:ENST00000704706Re-query CCDS DB by Protein ID:ENSP00000516003
Original member Current member EBI ENST00000704708.1 ENSP00000516005.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704708.1Link to Ensembl Protein Viewer:ENSP00000516005.1Re-query CCDS DB by Nucleotide ID:ENST00000704708Re-query CCDS DB by Protein ID:ENSP00000516005
Original member Current member EBI ENST00000704710.1 ENSP00000516007.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704710.1Link to Ensembl Protein Viewer:ENSP00000516007.1Re-query CCDS DB by Nucleotide ID:ENST00000704710Re-query CCDS DB by Protein ID:ENSP00000516007
Original member Current member EBI ENST00000704714.1 ENSP00000516009.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704714.1Link to Ensembl Protein Viewer:ENSP00000516009.1Re-query CCDS DB by Nucleotide ID:ENST00000704714Re-query CCDS DB by Protein ID:ENSP00000516009
Original member Current member EBI ENST00000704718.1 ENSP00000516013.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704718.1Link to Ensembl Protein Viewer:ENSP00000516013.1Re-query CCDS DB by Nucleotide ID:ENST00000704718Re-query CCDS DB by Protein ID:ENSP00000516013
Original member Current member NCBI NM_001135805.2 NP_001129277.1 Accepted alive Link to Nucleotide Sequence:NM_001135805.2Link to Protein Sequence:NP_001129277.1Re-query CCDS DB by Nucleotide ID:NM_001135805Re-query CCDS DB by Protein ID:NP_001129277Link to BLAST:NP_001129277.1
Original member Current member NCBI NM_001135806.2 NP_001129278.1 Accepted alive Link to Nucleotide Sequence:NM_001135806.2Link to Protein Sequence:NP_001129278.1Re-query CCDS DB by Nucleotide ID:NM_001135806Re-query CCDS DB by Protein ID:NP_001129278Link to BLAST:NP_001129278.1
Original member Current member NCBI NM_005639.3 NP_005630.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005639.3Link to Protein Sequence:NP_005630.1Re-query CCDS DB by Nucleotide ID:NM_005639Re-query CCDS DB by Protein ID:NP_005630Link to BLAST:NP_005630.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129277.1 422 P21579 422 100% 0 0
NP_001129278.1 422 P21579 422 100% 0 0
NP_005630.1 422 P21579 422 100% 0 0

Chromosomal Locations for CCDS 9017.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 79217520 79217685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79285787 79285971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79292008 79292130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79296069 79296236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79299384 79299551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79353502 79353619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79444073 79444206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 79448918 79449124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGGTGAGCGAGAGTCACCATGAGGCCCTGGCAGCCCCGCCTGTCACCACTGTCGCGACTGTTCTGCCAA
GCAACGCCACAGAGCCAGCCAGTCCTGGAGAAGGAAAGGAAGATGCATTTTCTAAGCTGAAGGAGAAGTT
TATGAATGAGTTGCATAAAATTCCATTGCCACCGTGGGCCTTAATTGCAATAGCCATAGTCGCAGTCCTT
TTAGTCCTGACCTGCTGCTTTTGTATCTGTAAGAAATGTTTGTTCAAAAAGAAAAACAAGAAGAAGGGAA
AGGAAAAAGGAGGGAAGAATGCCATTAACATGAAAGATGTAAAAGACTTAGGGAAGACGATGAAAGATCA
GGCCCTCAAGGATGATGATGCTGAAACTGGATTGACAGATGGAGAAGAAAAAGAAGAACCCAAAGAAGAG
GAGAAACTGGGAAAACTTCAGTATTCACTGGATTATGATTTCCAAAATAACCAGCTGCTGGTAGGGATCA
TTCAGGCTGCCGAACTGCCCGCCTTGGACATGGGGGGCACATCTGATCCTTACGTGAAAGTGTTTCTGCT
ACCTGATAAGAAGAAGAAATTTGAGACAAAAGTCCACCGAAAAACCCTTAATCCTGTCTTCAATGAGCAA
TTTACTTTCAAGGTACCATACTCGGAATTGGGTGGCAAAACCCTAGTGATGGCTGTATATGATTTTGATC
GTTTCTCTAAGCATGACATCATTGGAGAATTTAAAGTCCCTATGAACACAGTGGATTTTGGCCATGTAAC
TGAGGAATGGCGTGACCTGCAAAGTGCTGAGAAGGAAGAGCAAGAGAAATTGGGTGATATCTGCTTCTCC
CTTCGCTACGTACCTACTGCTGGTAAGCTGACTGTTGTCATTCTGGAGGCAAAGAACCTGAAGAAGATGG
ATGTGGGTGGCTTATCCGATCCTTATGTGAAGATTCATCTGATGCAGAATGGTAAGAGGCTGAAGAAGAA
AAAGACAACAATTAAAAAGAACACACTTAACCCCTACTACAATGAGTCATTCAGCTTTGAAGTACCTTTT
GAACAAATCCAGAAAGTGCAGGTGGTGGTAACTGTTTTGGACTATGACAAGATTGGCAAGAACGATGCCA
TCGGCAAAGTCTTTGTGGGCTACAACAGCACCGGCGCGGAGCTGCGACACTGGTCAGACATGCTGGCCAA
CCCCAGGCGACCTATTGCCCAGTGGCACACCCTGCAGGTAGAGGAGGAAGTTGATGCCATGCTGGCCGTC
AAGAAGTAA

Translation (422 aa):
MVSESHHEALAAPPVTTVATVLPSNATEPASPGEGKEDAFSKLKEKFMNELHKIPLPPWALIAIAIVAVL
LVLTCCFCICKKCLFKKKNKKKGKEKGGKNAINMKDVKDLGKTMKDQALKDDDAETGLTDGEEKEEPKEE
EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQ
FTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFS
LRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPF
EQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEEEVDAMLAV
KK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH