NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20006.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20006.1 Public Mus musculus 6 Creb3l2 23 108 98 CCDS HistoryNCBI Gene:208647Re-query CCDS DB by CCDS ID:20006.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20006.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041093.5 ENSMUSP00000040208.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041093.5Link to Ensembl Protein Viewer:ENSMUSP00000040208.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000041093Re-query CCDS DB by Protein ID:ENSMUSP00000040208
Original member Current member NCBI NM_178661.4 NP_848776.2 Accepted alive Link to Nucleotide Sequence:NM_178661.4Link to Protein Sequence:NP_848776.2Re-query CCDS DB by Nucleotide ID:NM_178661Re-query CCDS DB by Protein ID:NP_848776Link to BLAST:NP_848776.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848776.2 521 Q8BH52 521 100% 0 0

Chromosomal Locations for CCDS 20006.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 37332425 37332500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37334363 37334582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37335828 37335954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37336215 37336314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37353557 37353625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37354751 37354809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37355643 37355789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37358463 37358647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37362358 37362445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37363968 37364143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37379812 37380028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37441699 37441800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1566 nt):
ATGGAGGTGCTGGAGAGCGGGGAGCAGAGCGTCCTGCAGTGGGACCGCAAGCTGAGCGAGCTGTCAGAGC
CCGGAGAGACTGAGGCCCTCATGTACCACACGCACTTCTCGGAGCTCCTAGACGAGTTTTCCCAGAACGT
CCTGGGTCAGCTCCTGAGTGACCCTTTCCTCTCAGAGAAGAGCGAGTCAATGGAGGTGGAGCCATCTCCA
ACATCACCAGCGCCTCTCATCCAGGCTGAACACAGCTACTCTCTGAGCGAGGAGCCCCGGACTCAGTCAC
CATTTACCCATGCGGCTACCAGCGACAGCTTCAATGACGAGGAGGTGGAGAGTGAAAAATGGTACCTGTC
TACAGAGTTTCCTTCAGCTACCATCAAGACAGAGCCAATCACAGAGGAGCAGCCCCCGGGACTTGTCCCT
TCTGTCACTCTGACCATCACAGCCATTTCCACTCCTTTTGAAAAAGAAGAGTCCCCTCTGGATATGAATG
CTGGGGGGGACTCCTCATGCCAGACGCTTATTCCTAAGATTAAGCTGGAGCCGCACGAAGTGGATCAGTT
CTTAAACTTCTCCCCGAAAGAAGCCTCCGTGGATCAACTGCACTTACCACCAACACCACCCAGTAGTCAC
AGCAGTGACTCTGAGGGCAGCTTGAGCCCCAACCCACGCCTGCATCCCTTCAGCCTGTCTCAGGCCCACA
GCCCTGCCAGAGCCATGCCCCGGGGCCCCTCTGCCTTGTCCACATCTCCTCTCCTCACAGCTCCACATAA
GCTGCAGGGATCGGGCCCCCTGGTCCTGACAGAAGAGGAGAAGAGGACCCTGGTTGCCGAGGGCTATCCC
ATTCCCACCAAGCTGCCTCTGACAAAATCTGAGGAGAAGGCCCTGAAGAAAATCCGGAGAAAGATCAAGA
ATAAGATTTCTGCCCAAGAAAGCAGGAGAAAGAAGAAAGAATACATGGACAGCCTGGAGAAAAAAGTGGA
GTCTTGTTCAACTGAGAACTTGGAGCTTCGGAAGAAGGTGGAGGTGCTGGAGAACACCAATAGGACTCTC
CTTCAGCAACTTCAGAAGCTTCAGACTTTGGTGATGGGGAAGGTCTCTCGAACCTGCAAGTTAGCTGGCA
CACAGACTGGCACCTGCCTCATGGTCGTTGTGCTTTGCTTTGCTGTTGCATTTGGAAGCTTCTTTCAAGG
CTATGGGCCTTATCCTTCTGCCACCAAGATGGCTCTGCCCAGCCAGCATCCTCTGTCAGAGCCATACACA
GCCTCCGTGGTGAGATCCAGGAACCTGCTAATCTATGAGGAACACGCTCCCCTGGAAGAGTCGTCGAGCC
CAGCCTCAGCCGGGGAGCTGGGGGGCTGGGACAGAGGCTCCTCTCTGCTCAGGGCATCGTCGGGGCTTGA
GGCCCTGCCAGAGGTGGATCTTCCCCATTTCCTTATCTCCAATGAGACGAGCTTGGAGAAGTCAGTACTG
TTGGAGCTTCAGCAGCACCTGGTCAGCAGCAAACTGGAAGGGAACGAAACACTCAAGGTTGTAGAGCTGG
AGAGGAGAGTGAACGCCACCTTCTGA

Translation (521 aa):
MEVLESGEQSVLQWDRKLSELSEPGETEALMYHTHFSELLDEFSQNVLGQLLSDPFLSEKSESMEVEPSP
TSPAPLIQAEHSYSLSEEPRTQSPFTHAATSDSFNDEEVESEKWYLSTEFPSATIKTEPITEEQPPGLVP
SVTLTITAISTPFEKEESPLDMNAGGDSSCQTLIPKIKLEPHEVDQFLNFSPKEASVDQLHLPPTPPSSH
SSDSEGSLSPNPRLHPFSLSQAHSPARAMPRGPSALSTSPLLTAPHKLQGSGPLVLTEEEKRTLVAEGYP
IPTKLPLTKSEEKALKKIRRKIKNKISAQESRRKKKEYMDSLEKKVESCSTENLELRKKVEVLENTNRTL
LQQLQKLQTLVMGKVSRTCKLAGTQTGTCLMVVVLCFAVAFGSFFQGYGPYPSATKMALPSQHPLSEPYT
ASVVRSRNLLIYEEHAPLEESSSPASAGELGGWDRGSSLLRASSGLEALPEVDLPHFLISNETSLEKSVL
LELQQHLVSSKLEGNETLKVVELERRVNATF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH