NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25733.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25733.2 Public Mus musculus 11 Tspan10 23 108 98 CCDS HistoryNCBI Gene:208634Re-query CCDS DB by CCDS ID:25733.2See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 25733.2
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data. The updated start codon appears to be restricted to mouse and rat, and it has a weak Kozak signal. It is possible that ribosomal leaky scanning may allow the better conserved downstream start codon to be used some of the time. There is no experimental evidence indicating which start codon is preferentially used in vivo.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 25733.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044105.8 ENSMUSP00000041883.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044105.8Link to Ensembl Protein Viewer:ENSMUSP00000041883.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000044105Re-query CCDS DB by Protein ID:ENSMUSP00000041883
Original member Current member NCBI NM_145363.2 NP_663338.2 Accepted alive Link to Nucleotide Sequence:NM_145363.2Link to Protein Sequence:NP_663338.2Re-query CCDS DB by Nucleotide ID:NM_145363Re-query CCDS DB by Protein ID:NP_663338Link to BLAST:NP_663338.2

Chromosomal Locations for CCDS 25733.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120442779 120442817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120444105 120444736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120446077 120446404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGATGAAGGAAGAAGAATGCAGCCCCTTGCTGTCTCAGGACACTGCTGGCCGAGAGCACCCACTCACCA
GGAACAGTCCACCTACCGCAAATATTCCATGTCCAGCACCCTGGGAGAATCAGAAGGGGTCCTGGGGCTG
CAGGTGCTGTCCTGGAGCAAAGCGCCAGGCCTCAGGGGAAGGCCAGGCCTCCTCCCTCCCCCTTTCCACA
GGGAGCAACTGTGTCAAATATCTGATTTTCCTCTCTAACTTCCTCTTCTCCTTGCCGTCTCTGCTGGCCC
TAGCTGCAGGGCTCTGGGGCCTGACTGTTAAAAGGTCTCAGGGGATTGGCTGGGGTGGACCCGTGCCTAC
AGACCCTATGCTGATGCTGGTGCTGGGAGGCCTGGTGGTCAGCGTGGTGAGCCTGTCTGGATGTCTGGGT
GCTTTCTGTGAGAATAGCTGCCTGTTGCACTGGTACTGTGGGGCTGTCCTCTTTTGTCTGGCACTGGAAG
CCCTGGCAGGGGTTCTCATGGTAACCCTCTGGAAGCCACTGCAAGATAGCCTGAAGTATACACTTCATGC
AGCCATCATTCACTACTGGGATGACCCAGACCTGCACTTCCTCCTCGACCAAGTCCAGCTGGGGCTGCAA
TGCTGTGGGGCAGTATCCTACCAGGACTGGCAACAGAACCTGTACTTTAACTGCAGCTCTCCCGGGGTGC
AAGCCTGCAGCCTTCCAGCCTCTTGCTGCATCAACCCCCAGGAAGACGGAGCTGTAGTGAACACCCAATG
TGGTTTCGGAGCACTGGGCCTGGACCAGAATGTGGCTGGACAAGTAGTATTCCTGCAGGGCTGCTGGCCT
GCGCTGCAAGAATGGCTGCGGGGGAATACTGGTGCCATAGGTGACTGTGCTGTGGCCGTTGTCATGATCC
AAGGGACTGAACTCCTGTTGGCTGCCTGCCTGCTAAGGGCCCTGGCTGTCCACGAGGCGGCAGAGGACAT
AGAAGCAGGCCCCTTGTGA

Translation (332 aa):
MMKEEECSPLLSQDTAGREHPLTRNSPPTANIPCPAPWENQKGSWGCRCCPGAKRQASGEGQASSLPLST
GSNCVKYLIFLSNFLFSLPSLLALAAGLWGLTVKRSQGIGWGGPVPTDPMLMLVLGGLVVSVVSLSGCLG
AFCENSCLLHWYCGAVLFCLALEALAGVLMVTLWKPLQDSLKYTLHAAIIHYWDDPDLHFLLDQVQLGLQ
CCGAVSYQDWQQNLYFNCSSPGVQACSLPASCCINPQEDGAVVNTQCGFGALGLDQNVAGQVVFLQGCWP
ALQEWLRGNTGAIGDCAVAVVMIQGTELLLAACLLRALAVHEAAEDIEAGPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH