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Report for CCDS27236.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27236.1 Public Mus musculus 14 Stc1 23 108 98 CCDS HistoryNCBI Gene:20855Re-query CCDS DB by CCDS ID:27236.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27236.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000014957.9 ENSMUSP00000014957.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000014957.9Link to Ensembl Protein Viewer:ENSMUSP00000014957.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000014957Re-query CCDS DB by Protein ID:ENSMUSP00000014957
Original member Current member NCBI NM_009285.3 NP_033311.3 Accepted alive Link to Nucleotide Sequence:NM_009285.3Link to Protein Sequence:NP_033311.3Re-query CCDS DB by Nucleotide ID:NM_009285Re-query CCDS DB by Protein ID:NP_033311Link to BLAST:NP_033311.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033311.3 247 O55183 247 100% 0 0

Chromosomal Locations for CCDS 27236.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 69029390 69029507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69031503 69031645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69032234 69032445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69038233 69038503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGCTCCAAAACTCAGCAGTGATTCTGGCGCTGGTCATCAGTGCAGCTGCAGCGCACGAGGCGGAACAAA
ATGATTCTGTGAGCCCCAGAAAATCCCGGGTGGCGGCTCAAAATTCAGCTGAAGTGGTTCGCTGCCTCAA
CAGTGCCCTGCAGGTTGGCTGCGGGGCTTTTGCATGCCTGGAAAACTCCACATGTGACACAGATGGGATG
TACGACATTTGTAAATCCTTCTTGTACAGTGCTGCTAAATTTGACACTCAGGGAAAAGCATTTGTCAAAG
AGAGCTTAAAGTGCATCGCCAATGGGATCACCTCCAAGGTATTCCTTGCCATTCGGAGGTGTTCGACTTT
CCAGAGGATGATCGCCGAGGTGCAGGAGGACTGCTACAGCAAGCTTAACGTTTGCAGCATCGCCAAGCGC
AACCCGGAAGCCATCACTGAAGTCATACAGCTGCCCAATCACTTCTCCAACAGATACTACAACAGACTTG
TCCGAAGCCTTCTGGAATGTGATGAAGACACGGTCAGTACAATCAGAGACAGCCTGATGGAGAAGATCGG
GCCCAACATGGCCAGCCTCTTCCACATCCTGCAGACAGACCACTGTGCCCAGACACACCCCAGAGCTGAC
TTCAATAGGAGGCGCACAAATGAGCCACAGAAGCTGAAAGTCCTCCTCAGGAACCTCCGAGGTGAGGGGG
ACTCTCCCTCACACATCAAACGCACCTCCCAAGAGAGTGCGTAA

Translation (247 aa):
MLQNSAVILALVISAAAAHEAEQNDSVSPRKSRVAAQNSAEVVRCLNSALQVGCGAFACLENSTCDTDGM
YDICKSFLYSAAKFDTQGKAFVKESLKCIANGITSKVFLAIRRCSTFQRMIAEVQEDCYSKLNVCSIAKR
NPEAITEVIQLPNHFSNRYYNRLVRSLLECDEDTVSTIRDSLMEKIGPNMASLFHILQTDHCAQTHPRAD
FNRRRTNEPQKLKVLLRNLRGEGDSPSHIKRTSQESA


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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