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Report for CCDS29682.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29682.1 Public Mus musculus 19 Cep78 23 108 98 CCDS HistoryNCBI Gene:208518Re-query CCDS DB by CCDS ID:29682.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29682.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047704.7 ENSMUSP00000037596.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047704.7Link to Ensembl Protein Viewer:ENSMUSP00000037596.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047704Re-query CCDS DB by Protein ID:ENSMUSP00000037596
Original member Current member NCBI NM_198019.2 NP_932136.2 Accepted alive Link to Nucleotide Sequence:NM_198019.2Link to Protein Sequence:NP_932136.2Re-query CCDS DB by Nucleotide ID:NM_198019Re-query CCDS DB by Protein ID:NP_932136Link to BLAST:NP_932136.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_932136.2 790 Q6IRU7 790 100% 0 0

Chromosomal Locations for CCDS 29682.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 15955840 15956403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15959532 15959700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15960943 15961109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15962372 15962449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15969072 15969200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15970533 15970578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15970896 15971031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15974356 15974467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15974888 15974952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15976249 15976362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15978781 15978955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15981092 15981195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15981465 15981537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15981628 15981800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15984613 15984880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2373 nt):
ATGATCGACTCGGTGAAGCTCCGGCGCGACTGCGCGGCCGACTTCTTCTCGCACTACGAGTACCTGTGCG
CGCTGCAGGACTCCGTGCCGCTGCCCGCCGTGCGCGCCTGCCTGCGGGACGGCGTGCTGGACTTCAATGC
CGACCGGCTGCGCGCGGTGGACTGGGCACCGCTGCTCAGCACGCTCAGGGTGAACCGCGACCTGCCGCTG
GTGGCCATCAAGAGCTCCTTCCAGCCGTGGCTCGGGGAAACAGTTCTGCGGTCCGGAGGTGCTGATACAC
ACCGAATTTGTAGGAATCGAGTTCCTGCAGTGAGATCCAAAGACATAAGCTTCCAGTTATGTAAGGCTCT
TAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATCTGGAGCTAAATGGGCTGATTCTGAGAGAGAGA
GATTTGACTAGTCTAACAAAGGGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTC
CAATTGGAGATGGAGGTTTAGAAATTATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAA
CTTTACAGGGTGTAATCTGACATGGCAAGGAGCCTGTCATATGGCCAAGATCTTAAAGTATCAAACCATG
AGAAGGCATGAAGAAACCTGGGCGGAGAGCCTCCGCTACAGGAGACCCGATCTGGACTGCATGGCTGGCT
TACGGCGCATCACACTGAACTGCAACACACTCATTGGTGACCAGGGTGCAAGTGCCTTTGCAGACTCTCT
TAGTGAGGACCTGTGGCTTCGAGCACTCGACCTGCAGCAGTGCGGCCTCACCAGTGAAGGGGCCAAGGCT
TTACTGGAGGCCCTGGAAACCAACAGAACCCTGGTCGTTCTGGATATAAGGAAAAACCCACTTATTGATC
ATTCTATGATGAAAGCAGTTATCAAAAAGGTCCTCCAGAACGGAAGGAGTGCAGACTCAGAGTACCAGTG
GGTTACATCCCCATCATCAAAGGAACCGTCTAAAACCGCTAAGCAGAGAAAGAAAACAATTGTCTTAGGA
AGCAGCCGGAAGGGAAAAGCAACCATTAGAATTGGTTTAGCTACAAAGAAGCCTTCGAGTAATGGGAGAA
AACAGGGGCTCGGTAAAGACTGCTATGCTCCCAACCCTCTGCCTCCAGGCGCATCTGGTTTCTTGCCTTG
GCGAACAGCAGAACGTGCAAAAAGAAGCAGGAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCAC
CTGAAGAAATCAGATTTCCCGGTGACTGTGACAGTAGAAAGTCCTTCATCCTCAGAAACTGACGAGACTG
AAGATTCTTCAGAAAGTGTCCAGGAAGCGCCTCAGAAAACCAGCATAAAAGAAGAAACATTACAGGAGAA
GCTGGAGGAGTGCCTAAGGCAGCTGAAGGAGGAGAGAGTGATCCGCCTCAAGGCCGACAAGCGCGTCAGT
GAGCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGT
CCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCA
CGCTTTTTTGGACCTCCTTAAAGACGCTGGGCTTGGACAGCTTGCCACTATGGCTGGCATAGATCAGTCA
GATTTCCACCTGTTAGGTCGTCCGCAGATGAATTCCACGGTTAATACACCTATACAAGAACAGAAGGCAC
TTGAAGATGAAACTCTGCATCCGAAACAGACTGCCACCGGACAAATGCAGGATATCCGATTTCAGAAGAT
TACCAGCGATGCTCTGATTCCTTTACCTCTGAACACCGTCCAGGATCCGGCTTCTGCACAAGAGGCAGTG
GGAGCGTCTAGAGACCATCTGGGAGTTGTAGGCCTGGAGCAGCAGGAGGGATCTGCAGCAGGATTCATTG
CTAAAACAGGCTCTCCTTTAGCAGGTGGCATTCCTGGAGGCAGGAGTCAAAGAGAAGAGGAGGTGTTGTC
TAAACACAGCAGGTCTTCTTCAGAGAAGGGGAGCACGGCAAGTGAGCCCTCCAGAAGGCCGTCTGCTGAG
AGACACCCCAGGAAGGACCTGCTGTCCGATGCTGACCCTCCTGGGAACTCTGAAAGCAAAGGACCTGGGG
ATAGAAGGTCTCTGCTTAATGAGCCAATTAAAAGTGAATCTTTGAAAAAATGCATTTCTATCAAGAAAGA
AAACAGAATAGTGACTGTCTCATCTAAGACTATCAAAAGTAAACCCAACCTTCTAGAACATTCTGAAAGT
GATACTCTTGGATCTGATTTTGAACTTCAGGAACGTGTCCATTCGTCAGCACACCTAACCTGA

Translation (790 aa):
MIDSVKLRRDCAADFFSHYEYLCALQDSVPLPAVRACLRDGVLDFNADRLRAVDWAPLLSTLRVNRDLPL
VAIKSSFQPWLGETVLRSGGADTHRICRNRVPAVRSKDISFQLCKALRGCLSVSGVLRNLELNGLILRER
DLTSLTKGLSKSTSLVHLSLANCPIGDGGLEIICQGIKNSVTLKTVNFTGCNLTWQGACHMAKILKYQTM
RRHEETWAESLRYRRPDLDCMAGLRRITLNCNTLIGDQGASAFADSLSEDLWLRALDLQQCGLTSEGAKA
LLEALETNRTLVVLDIRKNPLIDHSMMKAVIKKVLQNGRSADSEYQWVTSPSSKEPSKTAKQRKKTIVLG
SSRKGKATIRIGLATKKPSSNGRKQGLGKDCYAPNPLPPGASGFLPWRTAERAKRSRSSSLIKTRDLSNH
LKKSDFPVTVTVESPSSSETDETEDSSESVQEAPQKTSIKEETLQEKLEECLRQLKEERVIRLKADKRVS
ELEHENAQLRNINFSLSEALHAQSLTNMILDDEGVLGSIENSFQKFHAFLDLLKDAGLGQLATMAGIDQS
DFHLLGRPQMNSTVNTPIQEQKALEDETLHPKQTATGQMQDIRFQKITSDALIPLPLNTVQDPASAQEAV
GASRDHLGVVGLEQQEGSAAGFIAKTGSPLAGGIPGGRSQREEEVLSKHSRSSSEKGSTASEPSRRPSAE
RHPRKDLLSDADPPGNSESKGPGDRRSLLNEPIKSESLKKCISIKKENRIVTVSSKTIKSKPNLLEHSES
DTLGSDFELQERVHSSAHLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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