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Report for CCDS18940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18940.1 Public Mus musculus 4 Srm 23 108 98 CCDS HistoryNCBI Gene:20810Re-query CCDS DB by CCDS ID:18940.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18940.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006611.8 ENSMUSP00000006611.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006611.8Link to Ensembl Protein Viewer:ENSMUSP00000006611.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000006611Re-query CCDS DB by Protein ID:ENSMUSP00000006611
Original member Current member NCBI NM_009272.4 NP_033298.1 Accepted alive Link to Nucleotide Sequence:NM_009272.4Link to Protein Sequence:NP_033298.1Re-query CCDS DB by Nucleotide ID:NM_009272Re-query CCDS DB by Protein ID:NP_033298Link to BLAST:NP_033298.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033298.1 302 Q64674 302 100% 0 0

Chromosomal Locations for CCDS 18940.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 148591620 148591786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148592044 148592164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148592482 148592574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148593288 148593441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148593768 148593997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148594083 148594205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148594287 148594307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGGAGCCTGGCCCCGACGGCCCAGCCGCGCCCGGCCCCGCCGCCATCCGTGAGGGCTGGTTCCGAGAGA
CCTGCAGCCTGTGGCCCGGCCAGGCCCTGTCGCTGCAAGTGGAGCAGCTGCTTCACCACCGGCGATCGCG
GTACCAAGACATCCTCGTCTTCCGCAGTAAAACCTACGGCAACGTGCTGGTTCTGGATGGCGTCATCCAG
TGTACTGAGAGGGATGAGTTCTCCTACCAGGAGATGATCGCCAACCTGCCGCTCTGCAGCCACCCCAACC
CGCGGAAGGTGCTGATCATCGGGGGTGGAGATGGGGGCGTCCTACGGGAAGTGGTGAAGCACCCCTCTGT
GGAGTCGGTGGTCCAGTGCGAGATTGATGAGGATGTCATTGAAGTCTCTAAGAAGTTCCTGCCTGGCATG
GCCGTTGGCTTCTCCAGCTCAAAGCTGACTCTCCACGTGGGCGATGGCTTTGAGTTCATGAAACAGAACC
AAGATGCCTTTGACGTCATCATCACCGACTCCTCAGACCCCATGGGCCCTGCTGAGAGCCTCTTCAAGGA
GTCCTATTACCAGCTCATGAAGACAGCACTCAAAGAAGATGGCATCCTGTGCTGCCAGGGTGAGTGCCAG
TGGCTGCACCTGGACCTCATCAAGGAGATGAGGCACTTCTGCAAATCTCTCTTCCCCGTGGTGGACTACG
CCTACTGTAGCATTCCTACCTATCCCAGCGGCCAGATCGGCTTCATGCTGTGTAGCAAAAACCCGAGCAC
CAACTTCCGGGAGCCAGTGCAGCAGTTGACACAGGCCCAGGTGGAGCAGATGCAGCTGAAATACTATAAC
TCGGACATGCACCGTGCCGCCTTCGTACTGCCCGAGTTCACCCGGAAGGCCCTCAATGACATAAGCTGA

Translation (302 aa):
MEPGPDGPAAPGPAAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQ
CTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIEVSKKFLPGM
AVGFSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGILCCQGECQ
WLHLDLIKEMRHFCKSLFPVVDYAYCSIPTYPSGQIGFMLCSKNPSTNFREPVQQLTQAQVEQMQLKYYN
SDMHRAAFVLPEFTRKALNDIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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