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Report for CCDS27974.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27974.1 Public Mus musculus 16 Snai2 23 108 98 CCDS HistoryNCBI Gene:20583Re-query CCDS DB by CCDS ID:27974.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27974.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023356.7 ENSMUSP00000023356.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023356.7Link to Ensembl Protein Viewer:ENSMUSP00000023356.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023356Re-query CCDS DB by Protein ID:ENSMUSP00000023356
Original member Current member NCBI NM_011415.3 NP_035545.1 Accepted alive Link to Nucleotide Sequence:NM_011415.3Link to Protein Sequence:NP_035545.1Re-query CCDS DB by Nucleotide ID:NM_011415Re-query CCDS DB by Protein ID:NP_035545Link to BLAST:NP_035545.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035545.1 269 P97469 269 100% 0 0

Chromosomal Locations for CCDS 27974.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 14705974 14706052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14706711 14707259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14708115 14708296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (810 nt):
ATGCCGCGCTCCTTCCTGGTCAAGAAACATTTCAACGCCTCCAAGAAGCCCAACTACAGCGAACTGGACA
CACACACAGTTATTATTTCCCCATATCTCTATGAAAGTTACCCTATACCTGTCATACCAAAACCAGAGAT
CCTCACCTCGGGAGCATACAGCCCTATTACTGTATGGACATCGTCGGCAGCTCCACTCCACTCTCCTTTA
CCCAGTGGCCTTTCTCCTCTTACTGGATACTCCTCATCCTTGGGGCGTGTAAGTCCCCCGCCTTCCTCTG
ACACTTCATCCAAGGATCACAGTGGTTCAGAAAGTCCCATTAGTGACGAAGAGGAGAGACTGCAGCCCAA
GCTTTCAGACCCCCATGCCATCGAAGCTGAGAAGTTTCAGTGCAATTTATGCAATAAGACCTATTCTACG
TTCTCTGGGCTGGCCAAACACAAGCAGCTGCACTGTGATGCCCAGTCTAGGAAATCGTTCAGCTGCAAGT
ACTGTGACAAGGAATATGTGAGCCTGGGTGCCCTGAAGATGCACATTCGAACCCACACATTGCCTTGTGT
CTGCAAGATCTGTGGCAAGGCTTTCTCCAGACCCTGGCTGCTTCAAGGACACATTAGAACTCACACTGGG
GAAAAGCCTTTCTCTTGCCCTCACTGCAATAGGGCTTTTGCAGACAGATCAAACCTGAGGGCACATCTGC
AGACCCACTCTGATGTAAAGAAATACCAGTGCAAAAACTGCTCCAAAACCTTCTCCAGAATGTCGCTTCT
GCATAAACATGAGGAGTCTGGCTGCTGTGTGGCACACTGA

Translation (269 aa):
MPRSFLVKKHFNASKKPNYSELDTHTVIISPYLYESYPIPVIPKPEILTSGAYSPITVWTSSAAPLHSPL
PSGLSPLTGYSSSLGRVSPPPSSDTSSKDHSGSESPISDEEERLQPKLSDPHAIEAEKFQCNLCNKTYST
FSGLAKHKQLHCDAQSRKSFSCKYCDKEYVSLGALKMHIRTHTLPCVCKICGKAFSRPWLLQGHIRTHTG
EKPFSCPHCNRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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