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Report for CCDS5398.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5398.1 Public Homo sapiens 7 CBX3 24 110 108 CCDS HistoryNCBI Gene:11335Re-query CCDS DB by CCDS ID:5398.1Re-query CCDS DB by GeneID:11335See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5398.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337620.8 ENSP00000336687.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000337620.8Link to Ensembl Protein Viewer:ENSP00000336687.4Re-query CCDS DB by Nucleotide ID:ENST00000337620Re-query CCDS DB by Protein ID:ENSP00000336687
Original member Current member EBI ENST00000396386.7 ENSP00000379670.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396386.7Link to Ensembl Protein Viewer:ENSP00000379670.2Re-query CCDS DB by Nucleotide ID:ENST00000396386Re-query CCDS DB by Protein ID:ENSP00000379670
Original member Current member NCBI NM_007276.5 NP_009207.2 Accepted alive Link to Nucleotide Sequence:NM_007276.5Link to Protein Sequence:NP_009207.2Re-query CCDS DB by Nucleotide ID:NM_007276Re-query CCDS DB by Protein ID:NP_009207Link to BLAST:NP_009207.2
Original member Current member NCBI NM_016587.4 NP_057671.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016587.4Link to Protein Sequence:NP_057671.2Re-query CCDS DB by Nucleotide ID:NM_016587Re-query CCDS DB by Protein ID:NP_057671Link to BLAST:NP_057671.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009207.2 183 Q13185 183 100% 0 0
NP_057671.2 183 Q13185 183 100% 0 0

Chromosomal Locations for CCDS 5398.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 26202999 26203022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26206368 26206510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26208393 26208555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26211662 26211756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 26212082 26212208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (552 nt):
ATGGCCTCCAACAAAACTACATTGCAAAAAATGGGAAAAAAACAGAATGGAAAGAGTAAAAAAGTTGAAG
AGGCAGAGCCTGAAGAATTTGTCGTGGAAAAAGTACTAGATCGACGTGTAGTGAATGGGAAAGTGGAATA
TTTCCTGAAGTGGAAGGGATTTACAGATGCTGACAATACTTGGGAACCTGAAGAAAATTTAGATTGTCCA
GAATTGATTGAAGCGTTTCTTAACTCTCAGAAAGCTGGCAAAGAAAAAGATGGTACAAAAAGAAAATCTT
TATCTGACAGTGAATCTGATGACAGCAAATCAAAGAAGAAAAGAGATGCTGCTGACAAACCAAGAGGATT
TGCCAGAGGTCTTGATCCTGAAAGAATAATTGGTGCCACAGACAGCAGTGGAGAATTGATGTTTCTCATG
AAATGGAAAGATTCAGATGAGGCAGACTTGGTGCTGGCGAAAGAGGCAAATATGAAGTGTCCTCAAATTG
TAATTGCTTTTTATGAAGAGAGACTAACTTGGCATTCTTGTCCAGAAGATGAAGCTCAATAA

Translation (183 aa):
MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCP
ELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMFLM
KWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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