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Report for CCDS57632.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57632.1 Public Mus musculus 8 Slc12a3 23 108 98 CCDS HistoryNCBI Gene:20497Re-query CCDS DB by CCDS ID:57632.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57632.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034218.4 ENSMUSP00000034218.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034218.4Link to Ensembl Protein Viewer:ENSMUSP00000034218.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000034218Re-query CCDS DB by Protein ID:ENSMUSP00000034218
Original member Current member NCBI NM_001205311.1 NP_001192240.1 Accepted alive Link to Nucleotide Sequence:NM_001205311.1Link to Protein Sequence:NP_001192240.1Re-query CCDS DB by Nucleotide ID:NM_001205311Re-query CCDS DB by Protein ID:NP_001192240Link to BLAST:NP_001192240.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001192240.1 1002 P59158 1002 100% 0 0

Chromosomal Locations for CCDS 57632.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 94329238 94329513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94330377 94330523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94331651 94331726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94333227 94333322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94333533 94333672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94334021 94334131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94334973 94335084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94335281 94335411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94339679 94339763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94340493 94340647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94340770 94340877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94341215 94341338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94343026 94343127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94344014 94344169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94344794 94344893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94345775 94345886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94346282 94346422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94348552 94348658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94349822 94349904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94351708 94351809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94353010 94353121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94356312 94356398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94357010 94357145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94358456 94358523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94365820 94365961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3009 nt):
ATGGCAGAGCTCCCCGTGACAGAGCTGCCTGGCGATGCTCTGTGCAGTGGGCGCTTCACCATCAGCACAC
TGATGGGAGGCGATGAGCCCCCACCAGCTGCCTGTGACAGCAGCCAGCCCAGCCACTTAACACACGGCAG
CACCTTATACATGCGCACCTTCGGTTACAACACCATAGACGTGGTGCCGGCCTACGAACACTATGCTAAC
AGCGCTCTGCCCGGTGAGCCCCGGAAGGTGCGGCCCACCCTGGCTGACCTGCATTCATTCCTCAAGCAGG
AAGGTAGCCACCTGCATGCCCTGGCCTTTGATGGACGGCAAGGTCGTGAGCTGACTGATGGACTTGTGGA
AGATGAGACAGGCACCAACAGTGAGAAGAGCCCTGGAGAACCTGTTCGCTTCGGCTGGGTCAAGGGGGTG
ATGATCCGTTGCATGCTCAACATCTGGGGAGTGATCCTCTACCTGCGACTCCCCTGGATTACGGCGCAGG
CGGGCATCGTGCTGACTTGGCTCATCATCCTGCTGTCGGTCATGGTGACATCCATCACCGGCCTCTCCAT
CTCCGCCATCTCTACCAATGGCAAGGTCAAGTCGGGTGGCACCTATTTCCTTATTTCCCGGAGTCTGGGA
CCAGAGCTGGGAGGCTCCATTGGCCTCATCTTCGCCTTTGCCAATGCTGTGGGTGTGGCCATGCACACTG
TGGGCTTTGCAGAAACCGTAAGGGACCTACTGCAGGAGTATGGCACACCCATCGTAGACCCCATCAATGA
CATCCGCATCATCGGTGTGGTCACGGTCACTGTGCTGCTGGCCATCTCGCTGGCTGGGATGGAGTGGGAG
TCCAAGGCCCAGGTGCTATTCTTTCTTGTCATCATGGTCTCCTTTGCCAACTACCTGGTGGGCACACTGA
TCCCAGCATCTGAAGACAAAGCCTCTAAAGGCTTCTACAGCTACCATGGGGACATTTTTGTTCAGAACCT
GGTACCCGACTGGAGAGGCATTGATGGTAGCTTCTTTGGCATGTTCTCCATCTTCTTCCCTTCGGCCACT
GGCATTCTGGCAGGGGCCAACATCTCCGGGGACCTCAAGGATCCTGCTGTAGCCATCCCCAAGGGAACAC
TCATGGCCATTTTCTGGACCACCATCTCCTACCTTGCCATCTCAGCTACCATCGGCTCCTGTGTGGTGAG
AGATGCCTCTGGGGATGTGAACGACACCATGACTCCTGGTCCAGGCCCCTGCGAAGGGCTAGCCTGTGGC
TATGGCTGGAACTTCACAGAATGCTCCCAGCAGCGCAGTTGCCGCTATGGCCTCATCAACTACTACCAGA
CCATGAGCATGGTGTCTGCCTTCGCACCCCTGATCACAGCCGGCATCTTTGGCGCCACCCTGTCTTCTGC
CTTGGCCTGTCTTGTCTCGGCTGCTAAGGTCTTCCAGTGCCTGTGTGAAGACCAGCTGTACCCTCTGATT
GGCTTTTTTGGCAAAGGCTATGGCAAGAACAGGGAGCCTGTGCGTGGCTACCTGCTGGCCTATGCCATTG
CTGTGGCCTTCATCATCATTGCTGAACTTAACACCATCGCCCCCATCATTTCCAACTTCTTCCTCTGCTC
CTACGCCCTCATCAATTTCAGCTGCTTCCATGCCTCCATCACCAACTCACCTGGATGGAGACCCTCCTTC
CGATACTACAGCAAGTGGGCGGCGCTGTTTGGGGCAGTGATCTCGGTGGTCATCATGTTCCTGCTTACCT
GGTGGGCTGCTCTCATTGCCATCGGAGTCGTCCTCTTCCTCCTGCTCTATGTGATCTACAAGAAGCCAGA
GGTGAACTGGGGTTCCTCAGTACAGGCTGGCTCCTACAATCTGGCCCTGAGCTACTCCGTGGGCCTCAAC
GAGGTGGAAGACCACATCAAGAACTACCGCCCCCAGTGCCTGGTGCTTACAGGGCCCCCCAACTTCCGCC
CAGCCCTTGTGGACTTTGTGAGCACATTTACCCAGAACCTAAGCCTAATGATTTGTGGTCATGTGCTCAT
TGGACCTGGCAAGCAGAGAGTGCCCGAGCTCCGGCTCATCGCCAGTGGACACACCAAGTGGCTGAACAAG
AGGAAGATCAAGGCCTTCTACTCTGACGTCATCGCTGAGGACTTGCGCAGTGGCGTCCAGATTCTCATGC
AGGCCTCAGGGCTTGGGAGAATGAAGCCGAACATTCTGGTGGTTGGATTCAAGAGGAACTGGCAGTCTGC
CCACCCAGCCACAGTGGAGGACTACATTGGTGTCCTGCATGATGCCTTTGACTTCAACTACGGGGTTTGT
GTCATGAGGATGCGCGAGGGGCTCAATGTCTCCGAGGCTCTGCAGACCCACACAACCCCAGAGGCATTGA
TACAAGAGGAGCAGGCTAGCACCATCTTCCAGTCGGAGCAAGGCAAGAAGACCATTGACATCTACTGGCT
GTTCGATGATGGAGGTCTCACCCTCCTCATCCCCTATCTCCTGCACCGCAAGAAGAGATGGGGCAAATGC
AAGATCCGAGTGTTTGTTGGGGGCCAGATCAACAGGATGGACGAAGAGAGAAAGGCGATCATCTCTCTGT
TGAGCAAGTTCAGACTGGGATTCCATGAAGTTCACGTCCTTCCCGACATCAACCAGAAGCCCCAGGCCGA
GCACACCAAGCGGTTTGAGGACATGATTGCACCCTTCCGCCTCAATGATGGCTTCAAGGACGAGGCCACC
GTCACTGAGATGAGGAGGGACTGTCCCTGGAAGATCTCAGATGAAGAGATTAACAAGAACAGAATTAAGT
CCCTTCGGCAGGTGAGACTGAGTGAGATACTGCTGGATTACTCTCGGGATGCTGCTCTGATCATCCTTAC
CCTGCCCATTGGAAGGAAGGGGAAGTGCCCCAGTTCGCTGTACATGGCCTGGCTGGAGACCCTGTCCCAG
GACCTCAGACCTCCCGTCCTCCTCATCCGAGGCAACCAGGAGAATGTGCTCACCTTTTACTGCCAGTGA

Translation (1002 aa):
MAELPVTELPGDALCSGRFTISTLMGGDEPPPAACDSSQPSHLTHGSTLYMRTFGYNTIDVVPAYEHYAN
SALPGEPRKVRPTLADLHSFLKQEGSHLHALAFDGRQGRELTDGLVEDETGTNSEKSPGEPVRFGWVKGV
MIRCMLNIWGVILYLRLPWITAQAGIVLTWLIILLSVMVTSITGLSISAISTNGKVKSGGTYFLISRSLG
PELGGSIGLIFAFANAVGVAMHTVGFAETVRDLLQEYGTPIVDPINDIRIIGVVTVTVLLAISLAGMEWE
SKAQVLFFLVIMVSFANYLVGTLIPASEDKASKGFYSYHGDIFVQNLVPDWRGIDGSFFGMFSIFFPSAT
GILAGANISGDLKDPAVAIPKGTLMAIFWTTISYLAISATIGSCVVRDASGDVNDTMTPGPGPCEGLACG
YGWNFTECSQQRSCRYGLINYYQTMSMVSAFAPLITAGIFGATLSSALACLVSAAKVFQCLCEDQLYPLI
GFFGKGYGKNREPVRGYLLAYAIAVAFIIIAELNTIAPIISNFFLCSYALINFSCFHASITNSPGWRPSF
RYYSKWAALFGAVISVVIMFLLTWWAALIAIGVVLFLLLYVIYKKPEVNWGSSVQAGSYNLALSYSVGLN
EVEDHIKNYRPQCLVLTGPPNFRPALVDFVSTFTQNLSLMICGHVLIGPGKQRVPELRLIASGHTKWLNK
RKIKAFYSDVIAEDLRSGVQILMQASGLGRMKPNILVVGFKRNWQSAHPATVEDYIGVLHDAFDFNYGVC
VMRMREGLNVSEALQTHTTPEALIQEEQASTIFQSEQGKKTIDIYWLFDDGGLTLLIPYLLHRKKRWGKC
KIRVFVGGQINRMDEERKAIISLLSKFRLGFHEVHVLPDINQKPQAEHTKRFEDMIAPFRLNDGFKDEAT
VTEMRRDCPWKISDEEINKNRIKSLRQVRLSEILLDYSRDAALIILTLPIGRKGKCPSSLYMAWLETLSQ
DLRPPVLLIRGNQENVLTFYCQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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