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Report for CCDS50203.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50203.1 Public Mus musculus 17 Six3 23 108 98 CCDS HistoryNCBI Gene:20473Re-query CCDS DB by CCDS ID:50203.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50203.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000176081.2 ENSMUSP00000135312.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176081.2Link to Ensembl Protein Viewer:ENSMUSP00000135312.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000176081Re-query CCDS DB by Protein ID:ENSMUSP00000135312
Original member Current member EBI ENSMUST00000175898.3 ENSMUSP00000135677.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000175898.3Link to Ensembl Protein Viewer:ENSMUSP00000135677.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000175898Re-query CCDS DB by Protein ID:ENSMUSP00000135677
Original member Current member NCBI NM_011381.4 NP_035511.2 Accepted alive Link to Nucleotide Sequence:NM_011381.4Link to Protein Sequence:NP_035511.2Re-query CCDS DB by Nucleotide ID:NM_011381Re-query CCDS DB by Protein ID:NP_035511Link to BLAST:NP_035511.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035511.2 333 Q62233-1 333 100% 0 0

Chromosomal Locations for CCDS 50203.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 85621240 85622048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 85623727 85623919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGGTATTCCGCTCCCCCCTAGATCTCTATTCCTCCCACTTCTTGTTGCCAAACTTCGCCGATTCTCACC
ACTGCTCCCTACTTCTGGCGAGTAGCGGCGGCGGGAGCGGTGCGAGCGGCGGCGGCGGCGGCGCGGGAGG
AGGCGGCGGCGGGAACCGTGCGGGAGGCGGCGGTGCTGGCGGAGCAGGCGGCGGCAGCGGCGGCGGCGGC
TCCAGGGCCCCCCCGGAAGAGTTGTCCATGTTCCAGTTGCCCACCCTCAACTTCTCGCCGGAGCAGGTGG
CCAGCGTCTGCGAGACGCTGGAGGAGACGGGCGACATCGAGCGGCTGGGCCGCTTCCTCTGGTCGCTGCC
CGTGGCCCCCGGGGCGTGCGAGGCCATCAACAAACACGAGTCGATCCTGCGCGCGCGCGCTGTCGTCGCC
TTCCACACCGGCAACTTCCGCGACCTGTACCACATCCTGGAGAACCACAAGTTCACTAAGGAGTCTCACG
GCAAGCTGCAAGCCATGTGGCTCGAGGCGCACTACCAGGAGGCCGAGAAGCTGCGCGGCCGCCCGCTCGG
CCCGGTGGACAAGTACCGCGTGCGCAAGAAGTTCCCTCTGCCGCGCACCATCTGGGATGGCGAGCAGAAG
ACCCATTGCTTCAAGGAGCGGACTCGGAGCCTGCTGCGGGAGTGGTACCTGCAGGATCCCTACCCCAACC
CCAGCAAGAAACGCGAACTGGCGCAGGCCACCGGCCTCACCCCCACACAAGTAGGCAACTGGTTTAAGAA
CCGGCGACAGCGCGACCGCGCAGCGGCGGCCAAGAACAGGCTCCAGCATCAGGCCATCGGGCCGAGCGGG
ATGCGCTCGCTGGCCGAGCCCGGCTGCCCCACGCACGGCTCAGCAGAGTCACCGTCCACGGCGGCCAGCC
CGACCACCAGTGTGTCCAGCCTGACGGAGCGCGCGGACACCGGCACTTCGATCCTCTCGGTAACCTCCAG
CGACTCGGAATGTGATGTATGA

Translation (333 aa):
MVFRSPLDLYSSHFLLPNFADSHHCSLLLASSGGGSGASGGGGGAGGGGGGNRAGGGGAGGAGGGSGGGG
SRAPPEELSMFQLPTLNFSPEQVASVCETLEETGDIERLGRFLWSLPVAPGACEAINKHESILRARAVVA
FHTGNFRDLYHILENHKFTKESHGKLQAMWLEAHYQEAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQK
THCFKERTRSLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNRLQHQAIGPSG
MRSLAEPGCPTHGSAESPSTAASPTTSVSSLTERADTGTSILSVTSSDSECDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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