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Report for CCDS45142.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45142.1 Public Homo sapiens 14 NOXRED1 24 110 108 CCDS HistoryNCBI Gene:122945Re-query CCDS DB by CCDS ID:45142.1Re-query CCDS DB by GeneID:122945See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45142.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380835.7 ENSP00000370215.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380835.7Link to Ensembl Protein Viewer:ENSP00000370215.2Re-query CCDS DB by Nucleotide ID:ENST00000380835Re-query CCDS DB by Protein ID:ENSP00000370215
Original member Current member NCBI NM_001113475.3 NP_001106946.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001113475.3Link to Protein Sequence:NP_001106946.1Re-query CCDS DB by Nucleotide ID:NM_001113475Re-query CCDS DB by Protein ID:NP_001106946Link to BLAST:NP_001106946.1
Original member Current member NCBI NM_001394980.1 NP_001381909.1 Accepted alive Link to Nucleotide Sequence:NM_001394980.1Link to Protein Sequence:NP_001381909.1Re-query CCDS DB by Nucleotide ID:NM_001394980Re-query CCDS DB by Protein ID:NP_001381909Link to BLAST:NP_001381909.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106946.1 359 Q6NXP6-1 359 100% 0 0
NP_001381909.1 359 Q6NXP6-1 359 100% 0 0

Chromosomal Locations for CCDS 45142.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 77394631 77394805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77405913 77406135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77406724 77406875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77407465 77407645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77413934 77414127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77422735 77422889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGGACATGCTCCAGGACCTTGAGTCCCTGCAGTTTGAGTATGGGGTTCCAGAGGAAGATCGTATCTGGC
TGTATTTGCAGGGCCGTTCTCGGGGACTGATGATCGAGGCTTGTGCCCATGCAACCTTCTTCTGCAAACT
ATTATATAATTTGAGAGCATCATTAAATAAGAATCAAAGTTCCAGACATCTCTCAATTGGCTCCCTTAAT
TCAGCCACTCCTGAAGAGTTTAAGGTGGGCATCATTGGAGGTGGCCACCTTGGGAAGCAGCTGGCTGGCA
CACTGCTGCAGCTTGGCCCCATCCCTGCTGAAAGCCTGCGGATCTCCACTCGGAGGCCAGAGACTCTGGG
TGAGCTCCAGAAGCTGGGAATCAAATGCTTTTACCATAACGCTGATCTGGTGAGTTGGGCCGATGTGATA
TTCCTCTGCTGCTTGCCGTCTCAGCTGCCTAATATCTGCGTAGAAATTTACACCAGCCTTGAGAAGGCCA
GCATTGTGTACAGCTTTGTAGCTGCCATCCCACTACCCAGGCTGAAACTACTGTTGAACCACACCAATAT
CTTGCGGCCTCAGTATCAGTATGATGAAGATTCTGTCAGCGTCTGGGGGGCCAATAAGGGAGTCATAGCT
GCTCTCCAAGATCCTACGATTCTTCAAGCTACCTGTCCCTACAGTCCTGCTGGGGGAATAATCCTCAATA
TCAAGTGGTTGGAGGGAGTGTTCTATGCGGCCCTAAACATATGCACAGCAAGAAACATGGCCCACTCCCA
AGTGCTGCAGCTTCTGAGTGAACTCTTTCTCTCCGTGCACTTTGAAGACTGTGGGAAAGACACAGCATCT
TGCCCAAAGTTGCAATTAACAGATTTTGTCAGCAAAGCCTATGGCAAGAATTTGTCTCAGGAAAGGCCTT
TCCCCTGGTTTGATCTGACTGCTGTGCAACTCAAGGAAACTCCGTTTAGCCAGCATCTCTCAAGTAGTCC
TGTTCTCCAAGACCACCTTACCCATCTATACTGTGCTTCATTTGGCATCTCCCTAACCAAAGAACAGCCA
GTCATTTCCACAGGCTTTCCATCCCAATAA

Translation (359 aa):
MDMLQDLESLQFEYGVPEEDRIWLYLQGRSRGLMIEACAHATFFCKLLYNLRASLNKNQSSRHLSIGSLN
SATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGELQKLGIKCFYHNADLVSWADVI
FLCCLPSQLPNICVEIYTSLEKASIVYSFVAAIPLPRLKLLLNHTNILRPQYQYDEDSVSVWGANKGVIA
ALQDPTILQATCPYSPAGGIILNIKWLEGVFYAALNICTARNMAHSQVLQLLSELFLSVHFEDCGKDTAS
CPKLQLTDFVSKAYGKNLSQERPFPWFDLTAVQLKETPFSQHLSSSPVLQDHLTHLYCASFGISLTKEQP
VISTGFPSQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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