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Report for CCDS14940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14940.1 Public Mus musculus 1 Cavin2 23 108 98 CCDS HistoryNCBI Gene:20324Re-query CCDS DB by CCDS ID:14940.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14940.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051572.7 ENSMUSP00000055694.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051572.7Link to Ensembl Protein Viewer:ENSMUSP00000055694.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000051572Re-query CCDS DB by Protein ID:ENSMUSP00000055694
Original member Current member NCBI NM_138741.1 NP_620080.1 Accepted alive Link to Nucleotide Sequence:NM_138741.1Link to Protein Sequence:NP_620080.1Re-query CCDS DB by Nucleotide ID:NM_138741Re-query CCDS DB by Protein ID:NP_620080Link to BLAST:NP_620080.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620080.1 418 Q63918 418 100% 0 0

Chromosomal Locations for CCDS 14940.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 51289386 51289868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51300649 51301422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGGGAGAGGACGCTGCACAGGCAGAAAAGTTCCAGCATCCAAACACAGACATGCTCCAGGAGAAGCCAT
CCAGCCCCAGCCCAATGCCTTCCTCCACACCGAGCCCCAGCCTGAACCTGGGGTCCACAGAGGAGGCCAT
CCGAGACAACTCGCAGGTGAATGCTGTCACCGTGCACACACTCCTGGATAAATTGGTCAACATGCTGGAC
GCCGTGAGGGAGAACCAGCACAACATGGAACAGCGTCAGATCAACCTGGAGGGCTCGGTGAAGGGCATCC
AGAACGACCTCACCAAGCTCTCCAAGTACCAGGCCTCCACCAGCAACACAGTGAGCAAGCTGCTAGAGAA
GTCTCGCAAGGTCAGCGCTCACACGCGGGCTGTCCGGGAGCGCCTCGAGAGGCAGTGTGTCCAGGTGAAG
AGACTGGAGAACAACCACGCCCAACTCCTCCGACGCAACCACTTCAAAGTGCTCATCTTCCAGGAAGAAA
GTGAGATCCCTGCCAGTGTGTTTGTGAAGGAGCCAGTTCCCAGCGCTGCAGAAGGCAAGGAGGAGCTTGC
TGATGAGAACAAGTCCCTGGAGGAAACTCTGCACAACGTGGACCTCTCCTCTGATGACGAATTGCCCCGT
GATGAGGAAGCCCTGGAAGATAGTGCAGAAGAGAAGATGGAAGAAAGCAGGGCAGAAAAAATAAAAAGAT
CCAGCCTCAAGAAAGTCGATAGCCTCAAGAAAGCGTTTTCTCGTCAGAACATCGAGAAAAAGATGAACAA
GCTGGGAACCAAGATCGTATCTGTTGAGAGGAGAGAAAAGATTAAGAAATCGCTCACACCCAACCACCAG
AAAGCATCTTCTGGGAAAAGCTCCCCCTTCAAGGTTTCTCCCCTCTCCTTTGGTCGTAAGAAAGTCCGAG
AGGGAGAAAGCTCTGTAGAAAATGAGACCAAGTTGGAAGACCAGATGCAGGAGGACCGCGAGGAGGGTTC
GTTCACAGAGGGTCTTTCTGAAGCATCCCTCCCCAGTGGCCTGATGGAGGGCAGCGCAGAAGATGCTGAG
AAATCAGCAAGGAGAGGGAACAACTCAGCCGTGGGCAGTAATGCGGATCTGACCATTGAGGAAGATGAAG
AAGAGGAGCCGGTAGCCCTGCAGCAGGCCCAGCAGGTGCGCTATGAGAGTGGCTACATGCTCAACTCCGA
GGAGATGGAGGAACCCAGTGAGAAACAGGTCCAGCCAGCTGTGCTGCATGTGGATCAGACTGCCTGA

Translation (418 aa):
MGEDAAQAEKFQHPNTDMLQEKPSSPSPMPSSTPSPSLNLGSTEEAIRDNSQVNAVTVHTLLDKLVNMLD
AVRENQHNMEQRQINLEGSVKGIQNDLTKLSKYQASTSNTVSKLLEKSRKVSAHTRAVRERLERQCVQVK
RLENNHAQLLRRNHFKVLIFQEESEIPASVFVKEPVPSAAEGKEELADENKSLEETLHNVDLSSDDELPR
DEEALEDSAEEKMEESRAEKIKRSSLKKVDSLKKAFSRQNIEKKMNKLGTKIVSVERREKIKKSLTPNHQ
KASSGKSSPFKVSPLSFGRKKVREGESSVENETKLEDQMQEDREEGSFTEGLSEASLPSGLMEGSAEDAE
KSARRGNNSAVGSNADLTIEEDEEEEPVALQQAQQVRYESGYMLNSEEMEEPSEKQVQPAVLHVDQTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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