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Report for CCDS32794.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32794.1 Public Homo sapiens 18 LDLRAD4 24 110 108 CCDS HistoryNCBI Gene:753Re-query CCDS DB by CCDS ID:32794.1Re-query CCDS DB by GeneID:753See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32794.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399848.7 ENSP00000382741.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399848.7Link to Ensembl Protein Viewer:ENSP00000382741.2Re-query CCDS DB by Nucleotide ID:ENST00000399848Re-query CCDS DB by Protein ID:ENSP00000382741
Original member Current member NCBI NM_001378101.1 NP_001365030.1 Accepted alive Link to Nucleotide Sequence:NM_001378101.1Link to Protein Sequence:NP_001365030.1Re-query CCDS DB by Nucleotide ID:NM_001378101Re-query CCDS DB by Protein ID:NP_001365030Link to BLAST:NP_001365030.1
Original member Current member NCBI NM_001394664.1 NP_001381593.1 Accepted alive Link to Nucleotide Sequence:NM_001394664.1Link to Protein Sequence:NP_001381593.1Re-query CCDS DB by Nucleotide ID:NM_001394664Re-query CCDS DB by Protein ID:NP_001381593Link to BLAST:NP_001381593.1
Original member Current member NCBI NM_001394665.1 NP_001381594.1 Accepted alive Link to Nucleotide Sequence:NM_001394665.1Link to Protein Sequence:NP_001381594.1Re-query CCDS DB by Nucleotide ID:NM_001394665Re-query CCDS DB by Protein ID:NP_001381594Link to BLAST:NP_001381594.1
Original member Current member NCBI NM_181482.5 NP_852147.1 Accepted alive Link to Nucleotide Sequence:NM_181482.5Link to Protein Sequence:NP_852147.1Re-query CCDS DB by Nucleotide ID:NM_181482Re-query CCDS DB by Protein ID:NP_852147Link to BLAST:NP_852147.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001365030.1 288 O15165-2 288 100% 0 0
NP_001381593.1 288 O15165-2 288 100% 0 0
NP_001381594.1 288 O15165-2 288 100% 0 0
NP_852147.1 288 O15165-2 288 100% 0 0

Chromosomal Locations for CCDS 32794.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 13387723 13387762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 13438244 13438384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 13621117 13621271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 13645127 13645657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGCCGGAAGCTGGTTTTCAGGCCACAAATGCTTTCACAGAGTGCAAATTCACCTGCACCAGTGGTAAAT
GCTTGTATCTTGGTTCGCTGGTCTGTAACCAACAGAACGACTGTGGGGACAACAGTGACGAAGAGAACTG
TCTCCTGGTGACCGAGCACCCGCCTCCGGGCATCTTCAACTCGGAGCTGGAGTTCGCCCAAATCATCATC
ATCGTCGTGGTGGTCACGGTGATGGTGGTGGTCATCGTCTGCCTGCTGAACCACTACAAAGTCTCCACGC
GGTCCTTCATCAACCGCCCGAACCAGAGCCGGAGGCGGGAGGACGGGCTGCCGCAGATCATGCATGCCCC
GCGGTCCAGGGACAGGTTCACAGCGCCGTCCTTCATCCAGAGGGATCGCTTCAGCCGCTTCCAGCCCACC
TACCCCTATGTGCAGCACGAGATTGATCTTCCTCCCACCATCTCCCTGTCCGACGGTGAAGAGCCACCTC
CTTACCAGGGGCCCTGCACCCTGCAGCTCCGGGACCCTGAACAGCAGATGGAACTCAACCGAGAGTCCGT
GAGGGCCCCACCCAACCGAACCATATTTGACAGTGATTTAATAGACATTGCTATGTATAGCGGGGGTCCA
TGCCCACCCAGCAGCAACTCGGGCATCAGTGCAAGCACCTGCAGCAGTAACGGGAGGATGGAGGGGCCAC
CCCCCACATACAGCGAGGTGATGGGCCACCACCCAGGCGCCTCTTTCCTCCATCACCAGCGCAGCAACGC
ACACAGGGGCAGCAGACTGCAGTTTCAGCAGAACAATGCAGAGAGCACAATAGTACCCATCAAAGGCAAA
GATAGGAAGCCTGGGAACCTGGTCTGA

Translation (288 aa):
MPEAGFQATNAFTECKFTCTSGKCLYLGSLVCNQQNDCGDNSDEENCLLVTEHPPPGIFNSELEFAQIII
IVVVVTVMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGLPQIMHAPRSRDRFTAPSFIQRDRFSRFQPT
YPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGP
CPPSSNSGISASTCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHRGSRLQFQQNNAESTIVPIKGK
DRKPGNLV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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