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Report for CCDS32793.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32793.1 Public Homo sapiens 18 LDLRAD4 24 110 108 CCDS HistoryNCBI Gene:753Re-query CCDS DB by CCDS ID:32793.1Re-query CCDS DB by GeneID:753See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 32793.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359446.11 ENSP00000352420.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359446.11Link to Ensembl Protein Viewer:ENSP00000352420.5Re-query CCDS DB by Nucleotide ID:ENST00000359446Re-query CCDS DB by Protein ID:ENSP00000352420
Original member Current member EBI ENST00000679091.1 ENSP00000503185.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679091.1Link to Ensembl Protein Viewer:ENSP00000503185.1Re-query CCDS DB by Nucleotide ID:ENST00000679091Re-query CCDS DB by Protein ID:ENSP00000503185
Original member Current member NCBI NM_001378098.1 NP_001365027.1 Accepted alive Link to Nucleotide Sequence:NM_001378098.1Link to Protein Sequence:NP_001365027.1Re-query CCDS DB by Nucleotide ID:NM_001378098Re-query CCDS DB by Protein ID:NP_001365027Link to BLAST:NP_001365027.1
Original member Current member NCBI NM_001378099.1 NP_001365028.1 Accepted alive Link to Nucleotide Sequence:NM_001378099.1Link to Protein Sequence:NP_001365028.1Re-query CCDS DB by Nucleotide ID:NM_001378099Re-query CCDS DB by Protein ID:NP_001365028Link to BLAST:NP_001365028.1
Original member Current member NCBI NM_001378100.1 NP_001365029.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001378100.1Link to Protein Sequence:NP_001365029.1Re-query CCDS DB by Nucleotide ID:NM_001378100Re-query CCDS DB by Protein ID:NP_001365029Link to BLAST:NP_001365029.1
Original member Current member NCBI NM_001394662.1 NP_001381591.1 Accepted alive Link to Nucleotide Sequence:NM_001394662.1Link to Protein Sequence:NP_001381591.1Re-query CCDS DB by Nucleotide ID:NM_001394662Re-query CCDS DB by Protein ID:NP_001381591Link to BLAST:NP_001381591.1
Original member Current member NCBI NM_001394663.1 NP_001381592.1 Accepted alive Link to Nucleotide Sequence:NM_001394663.1Link to Protein Sequence:NP_001381592.1Re-query CCDS DB by Nucleotide ID:NM_001394663Re-query CCDS DB by Protein ID:NP_001381592Link to BLAST:NP_001381592.1
Original member Current member NCBI NM_181481.5 NP_852146.1 Accepted alive Link to Nucleotide Sequence:NM_181481.5Link to Protein Sequence:NP_852146.1Re-query CCDS DB by Nucleotide ID:NM_181481Re-query CCDS DB by Protein ID:NP_852146Link to BLAST:NP_852146.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001365027.1 306 O15165-1 306 100% 0 0
NP_001365028.1 306 O15165-1 306 100% 0 0
NP_001365029.1 306 O15165-1 306 100% 0 0
NP_001381591.1 306 O15165-1 306 100% 0 0
NP_001381592.1 306 O15165-1 306 100% 0 0
NP_852146.1 306 O15165-1 306 100% 0 0

Chromosomal Locations for CCDS 32793.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 13387723 13387762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 13438244 13438384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 13621117 13621271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 13643359 13643412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 13645127 13645657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGCCGGAAGCTGGTTTTCAGGCCACAAATGCTTTCACAGAGTGCAAATTCACCTGCACCAGTGGTAAAT
GCTTGTATCTTGGTTCGCTGGTCTGTAACCAACAGAACGACTGTGGGGACAACAGTGACGAAGAGAACTG
TCTCCTGGTGACCGAGCACCCGCCTCCGGGCATCTTCAACTCGGAGCTGGAGTTCGCCCAAATCATCATC
ATCGTCGTGGTGGTCACGGTGATGGTGGTGGTCATCGTCTGCCTGCTGAACCACTACAAAGTCTCCACGC
GGTCCTTCATCAACCGCCCGAACCAGAGCCGGAGGCGGGAGGACGGGCTGCCGCAGGAAGGGTGCCTGTG
GCCTTCAGACAGCGCCGCACCGCGGCTGGGCGCCTCGGAGATCATGCATGCCCCGCGGTCCAGGGACAGG
TTCACAGCGCCGTCCTTCATCCAGAGGGATCGCTTCAGCCGCTTCCAGCCCACCTACCCCTATGTGCAGC
ACGAGATTGATCTTCCTCCCACCATCTCCCTGTCCGACGGTGAAGAGCCACCTCCTTACCAGGGGCCCTG
CACCCTGCAGCTCCGGGACCCTGAACAGCAGATGGAACTCAACCGAGAGTCCGTGAGGGCCCCACCCAAC
CGAACCATATTTGACAGTGATTTAATAGACATTGCTATGTATAGCGGGGGTCCATGCCCACCCAGCAGCA
ACTCGGGCATCAGTGCAAGCACCTGCAGCAGTAACGGGAGGATGGAGGGGCCACCCCCCACATACAGCGA
GGTGATGGGCCACCACCCAGGCGCCTCTTTCCTCCATCACCAGCGCAGCAACGCACACAGGGGCAGCAGA
CTGCAGTTTCAGCAGAACAATGCAGAGAGCACAATAGTACCCATCAAAGGCAAAGATAGGAAGCCTGGGA
ACCTGGTCTGA

Translation (306 aa):
MPEAGFQATNAFTECKFTCTSGKCLYLGSLVCNQQNDCGDNSDEENCLLVTEHPPPGIFNSELEFAQIII
IVVVVTVMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGLPQEGCLWPSDSAAPRLGASEIMHAPRSRDR
FTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRAPPN
RTIFDSDLIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPTYSEVMGHHPGASFLHHQRSNAHRGSR
LQFQQNNAESTIVPIKGKDRKPGNLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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