NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS14053.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14053.1 Public Homo sapiens 22 PNPLA5 24 110 108 CCDS HistoryNCBI Gene:150379Re-query CCDS DB by CCDS ID:14053.1Re-query CCDS DB by GeneID:150379See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14053.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000216177.9 ENSP00000216177.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000216177.9Link to Ensembl Protein Viewer:ENSP00000216177.3Re-query CCDS DB by Nucleotide ID:ENST00000216177Re-query CCDS DB by Protein ID:ENSP00000216177
Original member Current member NCBI NM_138814.4 NP_620169.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138814.4Link to Protein Sequence:NP_620169.1Re-query CCDS DB by Nucleotide ID:NM_138814Re-query CCDS DB by Protein ID:NP_620169Link to BLAST:NP_620169.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620169.1 429 Q7Z6Z6-1 429 100% 0 0

Chromosomal Locations for CCDS 14053.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 43880795 43880885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43881558 43881674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43884213 43884345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43886303 43886488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43887591 43887651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43889329 43889538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43889799 43889864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43891062 43891294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43891688 43891880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGGGCTTCTTAGAGGAGGAGGGCAGATGGAACCTGTCCTTCTCCGGCGCCGGCTACCTGGGCGCCCACC
ACGTGGGCGCCACCGAATGCCTGCGCCAGCGAGCCCCGCGCCTCCTCCAGGGCGCCCGCCGCATCTACGG
TTCCTCGTCTGGGGCGCTCAACGCAGTCAGCATCGTCTGCGGCAAGTCGGTCGACTTCTGCTGCTCCCAC
CTCCTGGGCATGGTTGGGCAGTTGGAGCGGCTGAGCCTAAGCATCCTGCACCCGGCCTACGCGCCCATCG
AGCACGTCAAGCAGCAGCTGCAGGATGCTCTGCCCCCCGACGCCCACGTCCTGGCCTCCCAGCGGCTGGG
CATTTCGCTGACCCGCTGGCCTGACGGACGCAACTTCTTGGTCACTGACTTCGCCACCTGCGATGAGCTC
ATCCAGGCCTTGGTCTGCACCTTATACTTTCCTTTCTACTGCGGGCTGATCCCCCCCGAGTTCAGAGGGG
AGCGCTACATCGATGGGGCTCTGAGCAACAACTTGCCCTTTGCAGACTGCCCCTCCACCATCACGGTGTC
GCCCTTCCATGGGACAGTGGACATCTGCCCCCAGAGCACCTCCCCCAACCTGCATGAGCTGAACGTCTTC
AACTTCAGCTTCCAAATCTCCACTGAGAACTTCTTCCTGGGGCTCATATGTCTCATACCCCCCAGCCTCG
AGGTAGTGGCCGACAACTGCAGACAAGGCTACCTGGATGCCCTGAGGTTCCTGGAGAGACGTGGACTCAC
CAAGGAACCAGTGCTATGGACGCTGGTGTCTAAGGAACCCCCAGCCCCGGCTGACGGAAACTGGGATGCT
GGCTGTGACCAACGCTGGAAGGGGGGCCTGTCTCTCAACTGGAAAGTGCCCCATGTGCAAGTCAAGGATG
TACCCAACTTTGAGCAGCTCTCACCAGAGCTGGAGGCTGCACTGAAGAAAGCATGTACGAGGGATCCCAG
CCGGTGGGCCCGCTTCTGGCACTCGGGGCCTGGACAGGTGCTGACGTACCTGCTGCTACCCTGCACACTG
CCCTTCGAGTACATCTACTTCCGCAGCAGAAGGTTGGTGGTGTGGCTGCCCGATGTGCCGGCGGACTTGT
GGTGGATGCAGGGCCTGCTGAGGAACATGGCCCTCGAGGTTTTCTCCAGGACCAAGGCCCAGCTCCTTGG
GCCCATCAGCCCTCCGGCCACTCGCGTCCTGGAAACAAGCCCCCTCCAACCCCAGATAGCTCCTCATAGA
GAGGAGCTCGGGCCCACCCACCAGGCCTGA

Translation (429 aa):
MGFLEEEGRWNLSFSGAGYLGAHHVGATECLRQRAPRLLQGARRIYGSSSGALNAVSIVCGKSVDFCCSH
LLGMVGQLERLSLSILHPAYAPIEHVKQQLQDALPPDAHVLASQRLGISLTRWPDGRNFLVTDFATCDEL
IQALVCTLYFPFYCGLIPPEFRGERYIDGALSNNLPFADCPSTITVSPFHGTVDICPQSTSPNLHELNVF
NFSFQISTENFFLGLICLIPPSLEVVADNCRQGYLDALRFLERRGLTKEPVLWTLVSKEPPAPADGNWDA
GCDQRWKGGLSLNWKVPHVQVKDVPNFEQLSPELEAALKKACTRDPSRWARFWHSGPGQVLTYLLLPCTL
PFEYIYFRSRRLVVWLPDVPADLWWMQGLLRNMALEVFSRTKAQLLGPISPPATRVLETSPLQPQIAPHR
EELGPTHQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH