NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6398.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6398.1 Public Homo sapiens 8 GLI4 24 110 108 CCDS HistoryNCBI Gene:2738Re-query CCDS DB by CCDS ID:6398.1Re-query CCDS DB by GeneID:2738See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6398.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340042.2 ENSP00000345024.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000340042.2Link to Ensembl Protein Viewer:ENSP00000345024.1Re-query CCDS DB by Nucleotide ID:ENST00000340042Re-query CCDS DB by Protein ID:ENSP00000345024
Original member Current member EBI ENST00000523522.5 ENSP00000430987.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000523522.5Link to Ensembl Protein Viewer:ENSP00000430987.1Re-query CCDS DB by Nucleotide ID:ENST00000523522Re-query CCDS DB by Protein ID:ENSP00000430987
Original member Current member NCBI NM_138465.4 NP_612474.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138465.4Link to Protein Sequence:NP_612474.1Re-query CCDS DB by Nucleotide ID:NM_138465Re-query CCDS DB by Protein ID:NP_612474Link to BLAST:NP_612474.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612474.1 376 P10075 376 100% 0 0

Chromosomal Locations for CCDS 6398.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 143269397 143269520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143274704 143274802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143275897 143276804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGGCAGCCCTAGGGGACATTCAGGAGTCCCCTTCTGTCCCGTCCCCTGTCAGTCTCTCATCACCGGGGA
CACCTGGAACCCAGCACCACGAGCCTCAGCTTCACCTCCATGGGCATCAACATGGCTCCCCTGGCTCCAG
CCCTAAGGTGCTCTCCCAGCCGTCCGACCTGGATCTCCAAGACGTAGAGGAAGTGGAGATCGGCAGAGAC
ACCTTCTGGCCCGACTCCGAGCCCAAGCCGGAGCAGGCTCCACGCTCTCCTGGCTCTCAGGCCCCTGACG
AGGGGGCGGGCGGGGCGCTGCGCAGCCTCCTGAGGAGCCTTCCCCGCAGGGCCCGGTGCAGCGCCGGCTT
CGGGCCTGAATCCAGCGCGGAGCGGCCGGCGGGCCAGCCGCCTGGGGCCGTCCCTTGCGCCCAGCCGCGG
GGCGCCTGGCGCGTGACGCTCGTGCAGCAAGCAGCGGCCGGGCCCGAGGGTGCGCCCGAGCGGGCTGCCG
AGCTGGGAGTCAACTTCGGTCGGAGCCGGCAGGGCAGCGCGCGGGGGGCCAAGCCGCACAGGTGCGAGGC
CTGCGGCAAGAGTTTCAAGTATAACTCGCTGCTCCTGAAGCACCAGCGCATCCACACGGGCGAGAAGCCC
TACGCCTGCCACGAGTGCGGCAAGCGCTTCCGCGGCTGGTCGGGCTTCATCCAGCACCACCGCATCCACA
CGGGCGAGAAGCCCTACGAGTGCGGCCAGTGCGGCCGCGCCTTCAGCCACAGCTCGCACTTCACGCAGCA
CCTGCGCATCCACAACGGCGAGAAGCCCTACAAGTGCGGCGAGTGCGGCCAGGCCTTCAGCCAGAGCTCC
AACCTGGTGCGCCACCAGCGGCTGCACACGGGTGAGAAGCCCTACGCCTGCAGCCAGTGCGGCAAGGCCT
TCATCTGGAGCTCCGTGCTCATCGAGCACCAGCGCATCCACACTGGCGAGAAGCCCTACGAGTGCTCCGA
CTGCGGCAAAGCCTTCCGCGGCCGCTCGCACTTCTTCCGGCACCTGCGGACCCACACGGGCGAGAAGCCC
TTCGCGTGTGGCGCCTGCGGCAAGGCCTTCGGCCAGAGCTCCCAGCTCATCCAGCACCAGCGGGTGCACT
ACCGCGAGTAG

Translation (376 aa):
MAALGDIQESPSVPSPVSLSSPGTPGTQHHEPQLHLHGHQHGSPGSSPKVLSQPSDLDLQDVEEVEIGRD
TFWPDSEPKPEQAPRSPGSQAPDEGAGGALRSLLRSLPRRARCSAGFGPESSAERPAGQPPGAVPCAQPR
GAWRVTLVQQAAAGPEGAPERAAELGVNFGRSRQGSARGAKPHRCEACGKSFKYNSLLLKHQRIHTGEKP
YACHECGKRFRGWSGFIQHHRIHTGEKPYECGQCGRAFSHSSHFTQHLRIHNGEKPYKCGECGQAFSQSS
NLVRHQRLHTGEKPYACSQCGKAFIWSSVLIEHQRIHTGEKPYECSDCGKAFRGRSHFFRHLRTHTGEKP
FACGACGKAFGQSSQLIQHQRVHYRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH