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Report for CCDS4910.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4910.1 Public Homo sapiens 6 TCTE1 24 110 108 CCDS HistoryNCBI Gene:202500Re-query CCDS DB by CCDS ID:4910.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4910.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371505.5 ENSP00000360560.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371505.5Link to Ensembl Protein Viewer:ENSP00000360560.4Re-query CCDS DB by Nucleotide ID:ENST00000371505Re-query CCDS DB by Protein ID:ENSP00000360560
Original member Current member NCBI NM_182539.4 NP_872345.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182539.4Link to Protein Sequence:NP_872345.2Re-query CCDS DB by Nucleotide ID:NM_182539Re-query CCDS DB by Protein ID:NP_872345Link to BLAST:NP_872345.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_872345.2 501 Q5JU00 501 100% 0 0

Chromosomal Locations for CCDS 4910.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 44280181 44280390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44282110 44282559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44285964 44286532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 44287549 44287825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGCAGGATACCGTAACGACATCAGCATTGTTGGACCCCAGCCACTCCTCAGTCTCCACCCAGGACAATT
CCTCCACTGGAGGACACACTTCAAGCACAAGCCCACAGCTCTCAAAGCCTTCAATCACACCAGTCCCTGC
AAAGTCCAGGAACCCACATCCCAGGGCCAATATCCGTCGGATGCGCCGGATCATTGCTGAGGATCCTGAG
TGGTCACTGGCCATCGTGCCCCTCCTCACAGAGCTCTGCATTCAGCACATTATCAGGAACTTCCAGAAAA
ACCCTATCCTGAAGCAGATGCTCCCGGAACACCAGCAGAAGGTCCTGAACCACCTGTCCCCTGACCTACC
ACTGGCTGTGACCGCCAACCTGATAGACAGTGAGAACTACTGGCTCCGCTGCTGCATGCATCGCTGGCCC
GTGTGCCACGTGGCCCACCATGGCGGCAGCTGGAAACGCATGTTCTTCGAGCGGCACCTGGAGAACCTGC
TAAAGCACTTTATCCCAGGCACCACAGACCCTGCGGTGATCCTCGACCTGCTGCCGCTCTGCCGGAATTA
CGTGCGCAGGGTCCACGTCGATCAGTTCCTTCCGCCGGTGCAGCTCCCGGCCCAGCTCCGGCCGGGCGAC
CAGTCCGACTCAGGCAGCGAGGGAGAGATGGAGGAGCCCACCGTTGACCACTACCAACTGGGCGATCTGG
TAGCTGGCCTGAGCCACCTGGAGGAGCTGGACCTGGTGTACGATGTCAAGGACTGCGGCATGAATTTCGA
GTGGAATCTCTTCCTCTTCACCTACCGTGACTGCCTCTCCTTGGCAGCCGCCATCAAGGCATGCCACACC
CTCAAGATCTTCAAGCTGACCCGAAGCAAGGTGGATGATGACAAGGCACGCATCATAATTCGAAGCCTTC
TGGACCACCCAGTCCTCGAGGAGCTGGACTTGTCACAAAACCTCATTGGAGACCGTGGTGCACGAGGTGC
TGCCAAGCTGCTGAGCCACAGCCGCCTGCGTGTGCTCAACCTGGCTAACAACCAGGTGCGTGCACCCGGT
GCCCAGTCCCTGGCTCACGCTCTGGCACACAACACCAACCTCATTTCCCTCAACCTACGTCTCAACTGCA
TCGAGGATGAGGGTGGCCAGGCTCTTGCCCATGCCTTGCAGACCAACAAGTGCCTCACCACGCTGCACCT
CGGTGGCAATGAGCTGTCTGAGCCCACCGCCACACTCCTGTCACAGGTGCTCGCCATCAACACCACACTC
ACCAGCATCAACCTGTCCTGCAACCACATCGGGCTGGACGGTGGGAAGCAGCTCCTGGAAGGCATGTCAG
ACAACAAGACCCTCCTGGAATTTGACTTGCGCCTGTCAGATGTGGCCCAGGAAAGCGAGTACCTCATTGG
CCAGGCCCTCTACGCAAACCGAGAAGCAGCCCGCCAGCGGGCCCTGAATCCCAGCCACTTCATGTCAACC
ATAACTGCCAATGGCCCTGAGAACTCTGTGGGATAA

Translation (501 aa):
MQDTVTTSALLDPSHSSVSTQDNSSTGGHTSSTSPQLSKPSITPVPAKSRNPHPRANIRRMRRIIAEDPE
WSLAIVPLLTELCIQHIIRNFQKNPILKQMLPEHQQKVLNHLSPDLPLAVTANLIDSENYWLRCCMHRWP
VCHVAHHGGSWKRMFFERHLENLLKHFIPGTTDPAVILDLLPLCRNYVRRVHVDQFLPPVQLPAQLRPGD
QSDSGSEGEMEEPTVDHYQLGDLVAGLSHLEELDLVYDVKDCGMNFEWNLFLFTYRDCLSLAAAIKACHT
LKIFKLTRSKVDDDKARIIIRSLLDHPVLEELDLSQNLIGDRGARGAAKLLSHSRLRVLNLANNQVRAPG
AQSLAHALAHNTNLISLNLRLNCIEDEGGQALAHALQTNKCLTTLHLGGNELSEPTATLLSQVLAINTTL
TSINLSCNHIGLDGGKQLLEGMSDNKTLLEFDLRLSDVAQESEYLIGQALYANREAARQRALNPSHFMST
ITANGPENSVG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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