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Report for CCDS56142.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56142.1 Public Homo sapiens 2 SLC38A11 24 110 108 CCDS HistoryNCBI Gene:151258Re-query CCDS DB by CCDS ID:56142.1Re-query CCDS DB by GeneID:151258See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56142.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409149.7 ENSP00000386272.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409149.7Link to Ensembl Protein Viewer:ENSP00000386272.3Re-query CCDS DB by Nucleotide ID:ENST00000409149Re-query CCDS DB by Protein ID:ENSP00000386272
Original member Current member EBI ENST00000409662.5 ENSP00000386774.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409662.5Link to Ensembl Protein Viewer:ENSP00000386774.1Re-query CCDS DB by Nucleotide ID:ENST00000409662Re-query CCDS DB by Protein ID:ENSP00000386774
Original member Current member NCBI NM_001199148.2 NP_001186077.1 Accepted alive Link to Nucleotide Sequence:NM_001199148.2Link to Protein Sequence:NP_001186077.1Re-query CCDS DB by Nucleotide ID:NM_001199148Re-query CCDS DB by Protein ID:NP_001186077Link to BLAST:NP_001186077.1
Original member Current member NCBI NM_001351538.2 NP_001338467.1 Accepted alive Link to Nucleotide Sequence:NM_001351538.2Link to Protein Sequence:NP_001338467.1Re-query CCDS DB by Nucleotide ID:NM_001351538Re-query CCDS DB by Protein ID:NP_001338467Link to BLAST:NP_001338467.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186077.1 406 Q08AI6-1 406 100% 0 0
NP_001338467.1 406 Q08AI6-1 406 100% 0 0

Chromosomal Locations for CCDS 56142.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164898437 164898730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164908640 164908771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164911636 164911748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164915112 164915273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164915903 164915973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164937350 164937429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164939450 164939556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164944569 164944634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164945593 164945727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164952707 164952767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGAAGCAAGCTGGGTTTCCTTTGGGAATATTGCTTTTATTCTGGGTTTCATATGTTACAGACTTTTCCC
TTGTTTTATTGATAAAAGGAGGGGCCCTCTCTGGAACAGATACCTACCAGTCTTTGGTCAATAAAACTTT
CGGCTTTCCAGGGTATCTGCTCCTCTCTGTTCTTCAGTTTTTGTATCCTTTTATAGCAATGATAAGTTAC
AATATAATAGCTGGAGATACTTTGAGCAAAGTTTTTCAAAGAATCCCAGGAGTTGATCCTGAAAACGTGT
TTATTGGTCGCCACTTCATTATTGGACTTTCCACAGTTACCTTTACTCTGCCTTTATCCTTGTACCGAAA
TATAGCAAAGCTTGGAAAGGTCTCCCTCATCTCTACAGGTTTAACAACTCTGATTCTTGGAATTGTAATG
GCAAGGGCAATTTCACTGGGTCCACACATACCAAAAACAGAAGACGCTTGGGTATTTGCAAAGCCCAATG
CCATTCAAGCGGTCGGGGTTATGTCTTTTGCATTTATTTGCCACCATAACTCCTTCTTAGTTTACAGTTC
TCTAGAAGAACCCACAGTAGCTAAGTGGTCCCGCCTTATCCATATGTCCATCGTGATTTCTGTATTTATC
TGTATATTCTTTGCTACATGTGGATACTTGACATTTACTGGCTTCACCCAAGGGGACTTATTTGAAAATT
ACTGCAGAAATGATGACCTGGTAACATTTGGAAGATTTTGTTATGGTGTCACTGTCATTTTGACATACCC
TATGGAATGCTTTGTGACAAGAGAGGTAATTGCCAATGTGTTTTTTGGTGGGAATCTTTCATCGGTTTTC
CACATTGTTGTAACAGTGATGGTCATCACTGTAGCCACGCTTGTGTCATTGCTGATTGATTGCCTCGGGA
TAGTTCTAGAACTCAATGGTGTGCTCTGTGCAACTCCCCTCATTTTTATCATTCCATCAGCCTGTTATCT
GAAACTGTCTGAAGAACCAAGGACACACTCCGATAAGATTATGTCTTGTGTCATGCTTCCCATTGGTGCT
GTGGTGATGGTTTTTGGATTCGTCATGGCTATTACAAATACTCAAGACTGCACCCATGGGCAGGAAATGT
TCTACTGCTTTCCTGACAATTTCTCTCTCACAAATACCTCAGAGTCTCATGTTCAGCAGACAACACAACT
TTCTACTTTAAATATTAGTATCTTTCAATGA

Translation (406 aa):
MKQAGFPLGILLLFWVSYVTDFSLVLLIKGGALSGTDTYQSLVNKTFGFPGYLLLSVLQFLYPFIAMISY
NIIAGDTLSKVFQRIPGVDPENVFIGRHFIIGLSTVTFTLPLSLYRNIAKLGKVSLISTGLTTLILGIVM
ARAISLGPHIPKTEDAWVFAKPNAIQAVGVMSFAFICHHNSFLVYSSLEEPTVAKWSRLIHMSIVISVFI
CIFFATCGYLTFTGFTQGDLFENYCRNDDLVTFGRFCYGVTVILTYPMECFVTREVIANVFFGGNLSSVF
HIVVTVMVITVATLVSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRTHSDKIMSCVMLPIGA
VVMVFGFVMAITNTQDCTHGQEMFYCFPDNFSLTNTSESHVQQTTQLSTLNISIFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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