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Report for CCDS58026.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58026.1 Public Homo sapiens 1 SETDB1 24 110 108 CCDS HistoryNCBI Gene:9869Re-query CCDS DB by CCDS ID:58026.1Re-query CCDS DB by GeneID:9869See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58026.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368962.6 ENSP00000357958.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368962.6Link to Ensembl Protein Viewer:ENSP00000357958.2Re-query CCDS DB by Nucleotide ID:ENST00000368962Re-query CCDS DB by Protein ID:ENSP00000357958
Original member Current member NCBI NM_001243491.2 NP_001230420.1 Accepted alive Link to Nucleotide Sequence:NM_001243491.2Link to Protein Sequence:NP_001230420.1Re-query CCDS DB by Nucleotide ID:NM_001243491Re-query CCDS DB by Protein ID:NP_001230420Link to BLAST:NP_001230420.1
Original member Current member NCBI NM_001393964.1 NP_001380893.1 Accepted alive Link to Nucleotide Sequence:NM_001393964.1Link to Protein Sequence:NP_001380893.1Re-query CCDS DB by Nucleotide ID:NM_001393964Re-query CCDS DB by Protein ID:NP_001380893Link to BLAST:NP_001380893.1
Original member Current member NCBI NM_001393965.1 NP_001380894.1 Accepted alive Link to Nucleotide Sequence:NM_001393965.1Link to Protein Sequence:NP_001380894.1Re-query CCDS DB by Nucleotide ID:NM_001393965Re-query CCDS DB by Protein ID:NP_001380894Link to BLAST:NP_001380894.1
Original member Current member NCBI NM_001393966.1 NP_001380895.1 Accepted alive Link to Nucleotide Sequence:NM_001393966.1Link to Protein Sequence:NP_001380895.1Re-query CCDS DB by Nucleotide ID:NM_001393966Re-query CCDS DB by Protein ID:NP_001380895Link to BLAST:NP_001380895.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230420.1 397 Q15047-2 397 100% 0 0
NP_001380893.1 397 Q15047-2 397 100% 0 0
NP_001380894.1 397 Q15047-2 397 100% 0 0
NP_001380895.1 397 Q15047-2 397 100% 0 0

Chromosomal Locations for CCDS 58026.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 150927715 150927974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150929967 150930118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150939940 150939974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150941329 150941428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150942563 150942688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150942852 150943053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150943920 150943993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150944918 150945162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGTCTTCCCTTCCTGGGTGCATTGGTTTGGATGCAGCAACAGCTACAGTGGAGTCTGAAGAGATTGCAG
AGCTGCAACAGGCAGTGGTTGAGGAACTGGGTATCTCTATGGAGGAACTTCGGCATTTCATCGATGAGGA
ACTGGAGAAGATGGATTGTGTACAGCAACGCAAGAAGCAGCTAGCAGAGTTAGAGACATGGGTAATACAG
AAAGAATCTGAGGTGGCTCACGTTGACCAACTCTTTGATGATGCATCCAGGGCAGTGACTAATTGTGAGT
CTTTGGTGAAGGACTTCTACTCCAAGCTGGGACTACAATACCGGGACAGTAGCTCTGAGGACGAATCTTC
CCGGCCTACAGAAATAATTGAGATTCCTGATGAAGATGATGATGTCCTCAGTATTGATTCAGGTGATGCT
GGGAGCAGAACTCCAAAAGACCAGAAGCTCCGTGAAGCTATGGCTGCCTTAAGAAAGTCAGCTCAAGATG
TTCAGAAGTTCATGGATGCTGTCAACAAGAAGAGCAGTTCCCAGGATCTGCATAAAGGAACCTTGAGTCA
GATGTCTGGAGAACTAAGCAAAGATGGTGACCTGATAGTCAGCATGCGAATTCTGGGCAAGAAGAGAACT
AAGACTTGGCACAAAGGCACCCTTATTGCCATCCAGACAGTTGGGCCAGGGAAGAAATACAAGGTGAAAT
TTGACAACAAAGGAAAGAGTCTACTGTCGGGGAACCATATTGCCTATGATTACCACCCTCCTGCTGACAA
GCTGTATGTGGGCAGTCGGGTGGTCGCCAAATACAAAGATGGGAATCAGGTCTGGCTCTATGCTGGCATT
GTAGCTGAGACACCAAACGTCAAAAACAAGCTCAGGTTTCTCATTTTCTTTGATGATGGCTATGCTTCCT
ATGTCACACAGTCGGAACTGTATCCCATTTGCCGGCCACTGAAAAAGACTTGGGAGGACATAGAAGACAT
CTCCTGCCGTGACTTCATAGAGGAGTATGTCACTGCCTACCCCAACCGCCCCATGGTACTGCTCAAGAGT
GGCCAGCTTATCAAGACTGAGTGGGAAGGCACGTGGTGGAAGTCCCGAGTTGAGGAGGTGGATGGCAGCC
TAGTCAGGATCCTCTTCCTGGTACTGTTCTTCTCTACAATTTTGGAGGCAGAGGTTGGTGGGGGGGGAAC
TTAA

Translation (397 aa):
MSSLPGCIGLDAATATVESEEIAELQQAVVEELGISMEELRHFIDEELEKMDCVQQRKKQLAELETWVIQ
KESEVAHVDQLFDDASRAVTNCESLVKDFYSKLGLQYRDSSSEDESSRPTEIIEIPDEDDDVLSIDSGDA
GSRTPKDQKLREAMAALRKSAQDVQKFMDAVNKKSSSQDLHKGTLSQMSGELSKDGDLIVSMRILGKKRT
KTWHKGTLIAIQTVGPGKKYKVKFDNKGKSLLSGNHIAYDYHPPADKLYVGSRVVAKYKDGNQVWLYAGI
VAETPNVKNKLRFLIFFDDGYASYVTQSELYPICRPLKKTWEDIEDISCRDFIEEYVTAYPNRPMVLLKS
GQLIKTEWEGTWWKSRVEEVDGSLVRILFLVLFFSTILEAEVGGGGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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