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Report for CCDS27681.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27681.1 Public Mus musculus 15 Desi1 23 108 98 CCDS HistoryNCBI Gene:28075Re-query CCDS DB by CCDS ID:27681.1Re-query CCDS DB by GeneID:28075See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27681.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000152227.7 ENSMUSP00000121504.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000152227.7Link to Ensembl Protein Viewer:ENSMUSP00000121504.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000152227Re-query CCDS DB by Protein ID:ENSMUSP00000121504
Original member NCBI NM_134095.3 NP_598856.1 Updated not alive Link to Nucleotide Sequence:NM_134095.3Link to Protein Sequence:NP_598856.1Re-query CCDS DB by Nucleotide ID:NM_134095Re-query CCDS DB by Protein ID:NP_598856
Current member NCBI NM_134095.4 NP_598856.1 Accepted alive Link to Nucleotide Sequence:NM_134095.4Link to Protein Sequence:NP_598856.1Re-query CCDS DB by Nucleotide ID:NM_134095Re-query CCDS DB by Protein ID:NP_598856Link to BLAST:NP_598856.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598856.1 168 Q9CQT7 168 100% 0 0

Chromosomal Locations for CCDS 27681.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 81994752 81994845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81998110 81998232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81999505 81999614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82002541 82002610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82003758 82003779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82015878 82015965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGGAGCCGCCAAATCTCTATCCGGTGAAGCTCTACGTGTACGACCTGTCCAAGGGCCTGGCCCGCCGGC
TCAGCCCCATCATGCTGGGGAAACAACTGGAAGGCATCTGGCACACCTCTATAGTTGTACACAAGGATGA
GTTCTTCTTCGGCAGCAGCGGTATTTCCAGCTGTACCCCGGGAGGGACATTGCTTGGGCCCCCAGACTCT
GTGGTTGATGTGGGAAACACAGAAGTCACAGAAGAAATCTTTCTGGAATACCTGTCCTCCCTGGGGGAGT
CTCTGTTCCGAGGAGAAGCCTACAACCTCTTTGAACACAACTGTAACACCTTTAGCAATGAAGTGGCGCA
GTTCCTGACTGGGCGAAAGATCCCTTCTTACATCACCGACCTGCCCTCAGAAGTTCTTTCCACGCCCTTT
GGACAAGCACTTCGGCCCTTCCTGGACTCCATTCAGATCCAGCCTCCAGGAGGGAACTCTGTGGGCAGAC
CCAATGGCCAAAGCTAA

Translation (168 aa):
MEPPNLYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGSSGISSCTPGGTLLGPPDS
VVDVGNTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPF
GQALRPFLDSIQIQPPGGNSVGRPNGQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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