NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS353.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
353.1 Public Homo sapiens 1 TXLNA 24 110 108 CCDS HistoryNCBI Gene:200081Re-query CCDS DB by CCDS ID:353.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 353.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373609.1 ENSP00000362711.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373609.1Link to Ensembl Protein Viewer:ENSP00000362711.1Re-query CCDS DB by Nucleotide ID:ENST00000373609Re-query CCDS DB by Protein ID:ENSP00000362711
Original member Current member EBI ENST00000373610.8 ENSP00000362712.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373610.8Link to Ensembl Protein Viewer:ENSP00000362712.3Re-query CCDS DB by Nucleotide ID:ENST00000373610Re-query CCDS DB by Protein ID:ENSP00000362712
Original member Current member NCBI NM_001376857.1 NP_001363786.1 Accepted alive Link to Nucleotide Sequence:NM_001376857.1Link to Protein Sequence:NP_001363786.1Re-query CCDS DB by Nucleotide ID:NM_001376857Re-query CCDS DB by Protein ID:NP_001363786Link to BLAST:NP_001363786.1
Original member Current member NCBI NM_175852.4 NP_787048.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_175852.4Link to Protein Sequence:NP_787048.1Re-query CCDS DB by Nucleotide ID:NM_175852Re-query CCDS DB by Protein ID:NP_787048Link to BLAST:NP_787048.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001363786.1 546 P40222 546 100% 0 0
NP_787048.1 546 P40222 546 100% 0 0

Chromosomal Locations for CCDS 353.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 32180346 32180514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32181242 32181577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32184525 32184616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32187954 32188124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32190055 32190249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32192311 32192430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32192657 32192731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32193208 32193300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32194065 32194160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32194902 32195195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1641 nt):
ATGAAGAACCAAGACAAAAAGAACGGGGCTGCCAAACAATCCAATCCAAAAAGCAGCCCAGGACAACCGG
AAGCAGGACCCGAGGGAGCCCAGGAGCGGCCCAGCCAGGCGGCTCCTGCAGTAGAAGCAGAAGGTCCCGG
CAGCAGCCAGGCTCCTCGGAAGCCGGAGGGGGCTCAAGCCAGAACGGCTCAGTCTGGGGCCCTTCGTGAT
GTCTCTGAGGAGCTGAGCCGCCAACTGGAAGACATACTGAGCACATACTGTGTGGACAATAACCAGGGGG
GCCCCGGCGAGGATGGGGCACAGGGTGAGCCGGCTGAACCCGAAGATGCAGAGAAGTCCCGGACCTATGT
GGCAAGGAATGGGGAGCCTGAACCAACTCCAGTAGTCAATGGAGAGAAGGAACCCTCCAAGGGGGATCCA
AACACAGAAGAGATCCGGCAGAGTGACGAGGTCGGAGACCGAGACCATCGAAGGCCACAGGAGAAGAAAA
AAGCCAAGGGTTTGGGGAAGGAGATCACGTTGCTGATGCAGACATTGAATACTCTGAGTACCCCAGAGGA
GAAGCTGGCTGCTCTGTGCAAGAAGTATGCTGAACTGCTGGAGGAGCACCGGAATTCACAGAAGCAGATG
AAGCTCCTACAGAAAAAGCAGAGCCAGCTGGTGCAAGAGAAGGACCACCTGCGCGGTGAGCACAGCAAGG
CCGTCCTGGCCCGCAGCAAGCTTGAGAGCCTATGCCGTGAGCTGCAGCGGCACAACCGCTCCCTCAAGGA
AGAAGGTGTGCAGCGGGCCCGGGAGGAGGAGGAGAAGCGCAAGGAGGTGACCTCGCACTTCCAGGTGACA
CTGAATGACATTCAGCTGCAGATGGAACAGCACAATGAGCGCAACTCCAAGCTGCGCCAAGAGAACATGG
AGCTGGCTGAGAGGCTCAAGAAGCTGATTGAGCAGTATGAGCTGCGCGAGGAGCATATCGACAAAGTCTT
CAAACACAAGGACCTACAACAGCAGCTGGTGGATGCCAAGCTCCAGCAGGCCCAGGAGATGCTAAAGGAG
GCAGAAGAGCGGCACCAGCGGGAGAAGGATTTTCTCCTGAAAGAGGCAGTAGAGTCCCAGAGGATGTGTG
AGCTGATGAAGCAGCAAGAGACCCACCTGAAGCAACAGCTTGCCCTATACACAGAGAAGTTTGAGGAGTT
CCAGAACACACTTTCCAAAAGCAGCGAGGTATTCACCACATTCAAGCAGGAGATGGAAAAGATGACTAAG
AAGATCAAGAAGCTGGAGAAAGAAACCACCATGTACCGGTCCCGGTGGGAGAGCAGCAACAAGGCCCTGC
TTGAGATGGCTGAGGAGAAAACAGTCCGGGATAAAGAACTGGAGGGCCTGCAGGTAAAAATCCAACGGCT
GGAGAAGCTGTGCCGGGCACTGCAGACAGAGCGCAATGACCTGAACAAGAGGGTACAGGACCTGAGTGCT
GGTGGCCAGGGCTCCCTCACTGACAGTGGCCCTGAGAGGAGGCCAGAGGGGCCTGGGGCTCAAGCACCCA
GCTCCCCCAGGGTCACAGAAGCGCCTTGCTACCCAGGAGCACCGAGCACAGAAGCATCAGGCCAGACTGG
GCCTCAAGAGCCCACCTCCGCCAGGGCCTAG

Translation (546 aa):
MKNQDKKNGAAKQSNPKSSPGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPRKPEGAQARTAQSGALRD
VSEELSRQLEDILSTYCVDNNQGGPGEDGAQGEPAEPEDAEKSRTYVARNGEPEPTPVVNGEKEPSKGDP
NTEEIRQSDEVGDRDHRRPQEKKKAKGLGKEITLLMQTLNTLSTPEEKLAALCKKYAELLEEHRNSQKQM
KLLQKKQSQLVQEKDHLRGEHSKAVLARSKLESLCRELQRHNRSLKEEGVQRAREEEEKRKEVTSHFQVT
LNDIQLQMEQHNERNSKLRQENMELAERLKKLIEQYELREEHIDKVFKHKDLQQQLVDAKLQQAQEMLKE
AEERHQREKDFLLKEAVESQRMCELMKQQETHLKQQLALYTEKFEEFQNTLSKSSEVFTTFKQEMEKMTK
KIKKLEKETTMYRSRWESSNKALLEMAEEKTVRDKELEGLQVKIQRLEKLCRALQTERNDLNKRVQDLSA
GGQGSLTDSGPERRPEGPGAQAPSSPRVTEAPCYPGAPSTEASGQTGPQEPTSARA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH