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Report for CCDS15362.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15362.1 Public Mus musculus 1 Rnf2 23 108 98 CCDS HistoryNCBI Gene:19821Re-query CCDS DB by CCDS ID:15362.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15362.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076110.10 ENSMUSP00000075476.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076110.10Link to Ensembl Protein Viewer:ENSMUSP00000075476.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000076110Re-query CCDS DB by Protein ID:ENSMUSP00000075476
Original member Current member EBI ENSMUST00000187048.6 ENSMUSP00000140896.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000187048.6Link to Ensembl Protein Viewer:ENSMUSP00000140896.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000187048Re-query CCDS DB by Protein ID:ENSMUSP00000140896
Original member NCBI NM_001360845.1 NP_001347774.1 Updated not alive Link to Nucleotide Sequence:NM_001360845.1Link to Protein Sequence:NP_001347774.1Re-query CCDS DB by Nucleotide ID:NM_001360845Re-query CCDS DB by Protein ID:NP_001347774
Current member NCBI NM_001360845.2 NP_001347774.1 Accepted alive Link to Nucleotide Sequence:NM_001360845.2Link to Protein Sequence:NP_001347774.1Re-query CCDS DB by Nucleotide ID:NM_001360845Re-query CCDS DB by Protein ID:NP_001347774Link to BLAST:NP_001347774.1
Original member NCBI NM_001360847.1 NP_001347776.1 Updated not alive Link to Nucleotide Sequence:NM_001360847.1Link to Protein Sequence:NP_001347776.1Re-query CCDS DB by Nucleotide ID:NM_001360847Re-query CCDS DB by Protein ID:NP_001347776
Current member NCBI NM_001360847.2 NP_001347776.1 Accepted alive Link to Nucleotide Sequence:NM_001360847.2Link to Protein Sequence:NP_001347776.1Re-query CCDS DB by Nucleotide ID:NM_001360847Re-query CCDS DB by Protein ID:NP_001347776Link to BLAST:NP_001347776.1
Original member NCBI NM_011277.3 NP_035407.1 Updated not alive Link to Nucleotide Sequence:NM_011277.3Link to Protein Sequence:NP_035407.1Re-query CCDS DB by Nucleotide ID:NM_011277Re-query CCDS DB by Protein ID:NP_035407
Current member NCBI NM_011277.4 NP_035407.1 Accepted alive Link to Nucleotide Sequence:NM_011277.4Link to Protein Sequence:NP_035407.1Re-query CCDS DB by Nucleotide ID:NM_011277Re-query CCDS DB by Protein ID:NP_035407Link to BLAST:NP_035407.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347774.1 336 Q9CQJ4 336 100% 0 0
NP_001347776.1 336 Q9CQJ4 336 100% 0 0
NP_035407.1 336 Q9CQJ4 336 100% 0 0

Chromosomal Locations for CCDS 15362.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 151471316 151471417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151471638 151471809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151473072 151473344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151476140 151476355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151476872 151477032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151478537 151478623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGTCTCAGGCTGTGCAGACAAATGGAACTCAACCATTAAGCAAAACATGGGAACTCAGTTTGTATGAGT
TACAACGAACACCTCAGGAGGCAATAACAGATGGCTTGGAAATTGTGGTTTCACCTAGAAGTCTACACAG
TGAATTAATGTGCCCAATTTGTTTGGATATGTTAAAGAACACCATGACTACAAAGGAGTGTTTACATCGG
TTTTGCGCGGATTGTATTATCACAGCCCTTAGAAGTGGCAACAAAGAGTGTCCTACCTGTCGGAAAAAAC
TGGTTTCTAAAAGATCACTAAGGCCAGACCCGAACTTTGATGCACTCATCAGCAAGATTTATCCCAGTCG
TGATGAGTATGAAGCGCATCAGGAAAGGGTCTTAGCAAGGATCAACAAACACAACAATCAGCAGGCTCTC
AGCCACAGCATCGAGGAGGGGCTGAAGATACAGGCCATGAACAGATTACAGCGAGGCAAAAAGCAGCAGA
TAGAAAATGGTAGTGGAGCAGAAGATAATGGTGACAGCTCCCACTGTAGTAACGCATCCACACACAGCAA
CCAGGAAGCGGGCCCGAGTAACAAACGGACCAAAACCTCTGATGACTCTGGGCTTGAACTTGATAACAAC
AATGCAGCAGTGGCGATTGATCCAGTCATGGACGGTGCCAGTGAGATTGAGTTAGTCTTCAGGCCCCATC
CAACTCTTATGGAAAAGGACGACAGCGCACAGACAAGATACATAAAGACTTCAGGCAATGCCACTGTTGA
TCACTTATCCAAGTATCTGGCTGTGAGGTTAGCTTTAGAAGAACTTCGAAGCAAAGGAGAATCAAACCAG
ATGAACCTGGATACAGCCAGTGAGAAGCAGTACACCATTTACATAGCCACAGCCAGTGGCCAGTTCACCG
TTTTAAATGGCTCCTTTTCTTTGGAATTGGTCAGTGAGAAATACTGGAAAGTGAACAAACCCATGGAACT
TTATTATGCACCCACCAAGGAGCACAAATGA

Translation (336 aa):
MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHR
FCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQERVLARINKHNNQQAL
SHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCSNASTHSNQEAGPSNKRTKTSDDSGLELDNN
NAAVAIDPVMDGASEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQ
MNLDTASEKQYTIYIATASGQFTVLNGSFSLELVSEKYWKVNKPMELYYAPTKEHK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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