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Report for CCDS43230.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43230.1 Public Homo sapiens 4 CRACD 24 110 108 CCDS HistoryNCBI Gene:57482Re-query CCDS DB by CCDS ID:43230.1Re-query CCDS DB by GeneID:57482See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43230.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264229.11 ENSP00000264229.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000264229.11Link to Ensembl Protein Viewer:ENSP00000264229.6Re-query CCDS DB by Nucleotide ID:ENST00000264229Re-query CCDS DB by Protein ID:ENSP00000264229
Original member Current member EBI ENST00000504228.6 ENSP00000423366.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000504228.6Link to Ensembl Protein Viewer:ENSP00000423366.1Re-query CCDS DB by Nucleotide ID:ENST00000504228Re-query CCDS DB by Protein ID:ENSP00000423366
Original member Current member EBI ENST00000682029.1 ENSP00000507165.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682029.1Link to Ensembl Protein Viewer:ENSP00000507165.1Re-query CCDS DB by Nucleotide ID:ENST00000682029Re-query CCDS DB by Protein ID:ENSP00000507165
Original member Current member NCBI NM_001393381.1 NP_001380310.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001393381.1Link to Protein Sequence:NP_001380310.1Re-query CCDS DB by Nucleotide ID:NM_001393381Re-query CCDS DB by Protein ID:NP_001380310Link to BLAST:NP_001380310.1
Original member Current member NCBI NM_001393382.1 NP_001380311.1 Accepted alive Link to Nucleotide Sequence:NM_001393382.1Link to Protein Sequence:NP_001380311.1Re-query CCDS DB by Nucleotide ID:NM_001393382Re-query CCDS DB by Protein ID:NP_001380311Link to BLAST:NP_001380311.1
Original member Current member NCBI NM_020722.2 NP_065773.1 Accepted alive Link to Nucleotide Sequence:NM_020722.2Link to Protein Sequence:NP_065773.1Re-query CCDS DB by Nucleotide ID:NM_020722Re-query CCDS DB by Protein ID:NP_065773Link to BLAST:NP_065773.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001380310.1 1233 Q6ZU35 1233 100% 0 0
NP_001380311.1 1233 Q6ZU35 1233 100% 0 0
NP_065773.1 1233 Q6ZU35 1233 100% 0 0

Chromosomal Locations for CCDS 43230.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 56298230 56298349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56307535 56307699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56310666 56310734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56313197 56313379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56314040 56316689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56323377 56323567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56324104 56324266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56327644 56327804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3702 nt):
ATGGGAACCCGGGCATTTTCCCATGACAGTATTTTTATCCCTGATGGGGGAGCAGAAAGTGAGCAGACAG
TTCAAGCAATGTCACAGGACAACATCCTGGGCAAAGTCAAAACTCTTCAGCAACAGTTGGGCAAGAATAT
CAAGTTTGGGCAGCGGTCACCCAATGCCATTCCCATGAATAAGGCAAACAGTGGAGAGGCTAGCTTAGAA
GAGGATCTGTTCCTGACCAGTCCCATGGAAATTGTGACTCAGCAGGACATCGTCCTCTCAGACGCAGAGA
ACAAGTCCAGTGATACGCCAAGTTCTCTAAGTCCTCTGAATCTCCCTGGAGCTGGAAGTGAGATGGAAGA
GAAGGTTGCTCCCGTTAAACCGTCTCGGCCAAAAAGGCACTTCTCTTCTGCTGGCACCATCGAAAGTGTC
AACTTAGATGCCATCCCCCTGGCCATCGCTCGCCTGGACAACAGTGCCGCCAAGCACAAGCTGGCTGTTA
AGCCAAAAAAACAGAGGGTGTCAAAGAAGCACAGGCGCCTTGCCCAGGATCCACAACATGAGCAAGGCGG
CCTTGAGAGTCGGCCCTGCCTGGACCAGAACGGACACCCAGGCGAGGACAAGCCAACGTGGCACGAAGAG
GAACCCAATCCGCTGGATTCCGAGGAAGAGAGAAGACGCCAAGAAGACTACTGGCGAGAACTGGAGGCCA
AGTGCAAGCGGCAAAAGGCGGAAGCAGCCGAGAAGAGACGCCTAGAGGAGCAGAGGCTGCAGGCGCTGGA
GAGGAGGCTTTGGGAAGAGAACAGAAGGCAGGAGCTCTTGGAGGAGGAGGGCGAGGGGCAGGAGCCGCCT
CTAGAGGCGGAAAGGGCGCCGCGGGAAGAGCAGCAGCGGAGCCTGGAAGCGCCAGGTTGGGAGGACGCGG
AGCGGAGGGAGCGTGAGGAGCGCGAGCGCCTGGAGGCGGAGGAGGAGCGAAGGCGTCTGCAGGCCCAGGC
CCAAGCGGAGGAGAGGCGGCGGCTGGAGGAGGACGCCAGGCTGGAGGAGCGGAGGCGGCAGGAGGAGGAG
GAAGGAAGATGCGCGGAGGAGCTCAAAAGGCAGGAGGAGGAGGAGGCTGAGGGATGGGAAGAGCTGGAAC
AGCAGGAGGCGGAGGTGCAGGGGCCGCCCGAGGCGTTGGAGGAGACTGGGGAGGGCCGGCGGGGCGCGGA
GGAGGAGGATCTGGGGGAAGAGGAGGAGGAGGGCCAGGCGCACCTGGAGGACTGGAGGGGGCAGCTCAGT
GAGCTTCTGAACGACTTTGAGGAGAGGCTCGAAGACCAGGAACGCCTGAAACCCGAAGGACAAAGAGAAC
ACTCCGAGGAGCCAGGTATTTGCGAGGAGCAGAACCCAGAGGCCGAGCGGCGAAGAGAGCAGCAGGGAAG
GAGCGGGGATTTCCAGGGGGCCGATCGTCCTGGGCCCGAGGAAAAGAGAGAAGAAGGGGACACGGAGCCT
CTCCTGAAACAAGAGGGGCCGGTGGAAGCCGCGCAGCCTCCGGTGGAGAGGAAAGAAGCCGCCGCCCTTG
AACAAGGCCGCAAGGTGGAGGAGCTGCGGTGGCAGGAGGTGGACGAGAGACAGACCATGCCCCGGCCCTA
CACGTTCCAGGTGTCCTCCGGAGGGAAGCAGATTCTCTTTCCCAAAGTCAACCTGAGCCCCGTGACGCCC
GCAAAGGACACGGGGCTCACCGCTGCTCCCCAGGAACCAAAGGCCCCCAAAGCCAGCCCAGTCCAGCACG
CCCTACCGTCGTCCCTGAGCGTTCCCCACACCGCCATTCTGGTCACGGGCGCGCAGCTCTGTGGCCCGGC
AGTCAACCTGAGCCAGATCAAGGACACCGCGTGCAAGTCCCTCCTGGGCTTGGAGGAGAAGAAGCACGCG
GAAGCCCCAGCTGGGGAGAACCCTCCCCGAGGCCCCGGCGACGCGAGGGCGGGCAGCGGGAAGGCTAAGC
CCCGCCAGGAGTCTCCCAGCAGCGCGTCCGCACTCGCAGAATGGGCTTCCATTCGGTCCAGAATCCTGAA
GAACGCAGAGAGTGACCCGCGCAGCAGCGAGAGGGACCAGTTGAGGCCCGGTGATGAGTCCACTCCCAGG
GGCCGGTGTGATTCCCGCGGGAACCAACGGAAGACTCCGCCAGTCAATGCAAAGTTCTCTATTATGCCTG
CCTGGCAGAAATTTTCCGATGGTGGCACGGAGACCTCCAAACAGAGCACGGAAGCTGAAAGCATACGAAA
AAGACCCATGCTGGGACCCAGCGAAGAGACAGCCCCCCAGCCTCCTCCTGCTGGTGTTCGCGAGCTCGGG
AAGGGTCCGGAGAAGTCGGAGATGCACCGGGAGCCCGCAGACACCACCGAGGGATGCAAATTTGCCAAAG
ACCTCCCGTCTTTCCTTGTCCCAAGCCTTCCTTACCCTCCGCAGAAAGTGGTGGCCCACACAGAGTTCAC
GACCTCGTCGGACAGCGAGACTGCAAACGGGATAGCAAAGCCAGACCCTGTGATGCCAGGTGGAGAGGAA
AAAGCCTCACCGTTTGGAATAAAATTGAGAAGGACCAACTATTCCTTGCGCTTCAACTGCGACCAACAGG
CAGAACAGAAGAAGAAGAAGAGGCACAGCAGCACCGGAGACAGCGCGGATGCAGGGCCGCCTGCAGCGGG
GAGCGCTCGTGGAGAGAAAGAGATGGAGGGTGTGGCCCTCAAGCATGGTCCATCCCTCCCCCAAGAGCGG
AAGCAAGCCCCTTCCACCCGGAGGGACTCCGCTGAACCTTCCAGCAGCCGCTCTGTTCCTGTGGCCCACC
CTGGGCCTCCACCGGCCAGCAGCCAGACCCCGGCTCCGGAGCACGACAAGGCAGCAAACAAAATGCCACT
GGCACAAAAGCCAGCACTGGCTCCCAAGCCCACCAGTCAGACCCCACCAGCATCCCCACTTTCCAAACTG
AGCAGGCCCTACTTGGTAGAGCTGCTGTCTCGCCGAGCGGGGAGGCCGGACCCAGAGCCAAGTGAGCCGT
CCAAGGAGGACCAGGAGAGCAGTGACCGCCGGCCACCCTCGCCCCCAGGCCCCGAGGAAAGGAAGGGACA
GAAGAGGGACGAGGAGGAAGAGGCGACAGAGAGGAAACCTGCTTCCCCACCTCTGCCTGCCACTCAGCAA
GAGAAACCTTCTCAAACACCCGAGGCCGGGAGGAAAGAGAAGCCGATGCTTCAGAGCAGACACTCCTTAG
ATGGCTCCAAACTTACAGAGAAAGTGGAAACTGCTCAGCCGCTGTGGATAACGTTAGCACTGCAAAAGCA
AAAGGGGTTTCGGGAGCAGCAGGCGACGCGGGAGGAGAGAAAGCAAGCCAGAGAGGCCAAACAGGCAGAA
AAGCTCTCCAAAGAAAATGTCAGTGTCAGCGTGCAGCCTGGAAGCAGCAGTGTCAGCAGAGCAGGTTCCC
TGCACAAGTCCACTGCTCTGCCAGAAGAGAAGAGGCCCGAGACTGCAGTGTCCAGGCTTGAGCGCAGAGA
ACAGCTGAAAAAGGCCAATACTCTTCCTACGTCTGTGACAGTGGAGATCTCCGACTCGGCTCCCCCAGCG
CCGCTGGTAAAAGAAGTCACCAAGAGGTTTTCCACCCCGGATGCTGCCCCCGTGTCAACAGAACCAGCCT
GGCTGGCTTTGGCCAAAAGGAAAGCAAAGGCTTGGAGCGACTGTCCACAGATTATTAAGTAA

Translation (1233 aa):
MGTRAFSHDSIFIPDGGAESEQTVQAMSQDNILGKVKTLQQQLGKNIKFGQRSPNAIPMNKANSGEASLE
EDLFLTSPMEIVTQQDIVLSDAENKSSDTPSSLSPLNLPGAGSEMEEKVAPVKPSRPKRHFSSAGTIESV
NLDAIPLAIARLDNSAAKHKLAVKPKKQRVSKKHRRLAQDPQHEQGGLESRPCLDQNGHPGEDKPTWHEE
EPNPLDSEEERRRQEDYWRELEAKCKRQKAEAAEKRRLEEQRLQALERRLWEENRRQELLEEEGEGQEPP
LEAERAPREEQQRSLEAPGWEDAERREREERERLEAEEERRRLQAQAQAEERRRLEEDARLEERRRQEEE
EGRCAEELKRQEEEEAEGWEELEQQEAEVQGPPEALEETGEGRRGAEEEDLGEEEEEGQAHLEDWRGQLS
ELLNDFEERLEDQERLKPEGQREHSEEPGICEEQNPEAERRREQQGRSGDFQGADRPGPEEKREEGDTEP
LLKQEGPVEAAQPPVERKEAAALEQGRKVEELRWQEVDERQTMPRPYTFQVSSGGKQILFPKVNLSPVTP
AKDTGLTAAPQEPKAPKASPVQHALPSSLSVPHTAILVTGAQLCGPAVNLSQIKDTACKSLLGLEEKKHA
EAPAGENPPRGPGDARAGSGKAKPRQESPSSASALAEWASIRSRILKNAESDPRSSERDQLRPGDESTPR
GRCDSRGNQRKTPPVNAKFSIMPAWQKFSDGGTETSKQSTEAESIRKRPMLGPSEETAPQPPPAGVRELG
KGPEKSEMHREPADTTEGCKFAKDLPSFLVPSLPYPPQKVVAHTEFTTSSDSETANGIAKPDPVMPGGEE
KASPFGIKLRRTNYSLRFNCDQQAEQKKKKRHSSTGDSADAGPPAAGSARGEKEMEGVALKHGPSLPQER
KQAPSTRRDSAEPSSSRSVPVAHPGPPPASSQTPAPEHDKAANKMPLAQKPALAPKPTSQTPPASPLSKL
SRPYLVELLSRRAGRPDPEPSEPSKEDQESSDRRPPSPPGPEERKGQKRDEEEEATERKPASPPLPATQQ
EKPSQTPEAGRKEKPMLQSRHSLDGSKLTEKVETAQPLWITLALQKQKGFREQQATREERKQAREAKQAE
KLSKENVSVSVQPGSSSVSRAGSLHKSTALPEEKRPETAVSRLERREQLKKANTLPTSVTVEISDSAPPA
PLVKEVTKRFSTPDAAPVSTEPAWLALAKRKAKAWSDCPQIIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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