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Report for CCDS5756.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5756.1 Public Homo sapiens 7 LSMEM1 24 110 108 CCDS HistoryNCBI Gene:286006Re-query CCDS DB by CCDS ID:5756.1Re-query CCDS DB by GeneID:286006See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5756.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000312849.4 ENSP00000323304.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000312849.4Link to Ensembl Protein Viewer:ENSP00000323304.3Re-query CCDS DB by Nucleotide ID:ENST00000312849Re-query CCDS DB by Protein ID:ENSP00000323304
Original member Current member EBI ENST00000439068.6 ENSP00000389278.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000439068.6Link to Ensembl Protein Viewer:ENSP00000389278.2Re-query CCDS DB by Nucleotide ID:ENST00000439068Re-query CCDS DB by Protein ID:ENSP00000389278
Original member Current member NCBI NM_001134468.2 NP_001127940.1 Accepted alive Link to Nucleotide Sequence:NM_001134468.2Link to Protein Sequence:NP_001127940.1Re-query CCDS DB by Nucleotide ID:NM_001134468Re-query CCDS DB by Protein ID:NP_001127940Link to BLAST:NP_001127940.1
Original member Current member NCBI NM_182597.3 NP_872403.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182597.3Link to Protein Sequence:NP_872403.1Re-query CCDS DB by Nucleotide ID:NM_182597Re-query CCDS DB by Protein ID:NP_872403Link to BLAST:NP_872403.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127940.1 131 Q8N8F7-1 131 100% 0 0
NP_872403.1 131 Q8N8F7-1 131 100% 0 0

Chromosomal Locations for CCDS 5756.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 112484817 112484943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112486923 112487051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 112489810 112489949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (396 nt):
ATGACTCATTCTTCCCAGGACACTGGTTCTTGTGGCATTCAGGAAGATGGAAAGCTTTATGTGGTGGATT
CCATAAATGACTTAAACAAACTAAACCTCTGTCCAGCCGGATCGCAGCATCTGTTCCCTCTAGAGGACAA
AATCCCAGTCCTTGGCACAAACTCAGGAAATGGAAGCCGGAGTCTGTTTTTTGTGGGGCTGCTAATTGTG
CTGATTGTCAGCCTGGCACTGGTTTTTTTCGTGATATTTCTAATAGTTCAAACTGGAAACAAGATGGATG
ATGTGTCAAGAAGACTAACAGCTGAAGGAAAAGACATAGATGATCTTAAGAGAATCAATAACATGATCGT
AAAGCGACTCAACCAACTCAACCAACTGGACTCTGAACAAAACTAA

Translation (131 aa):
MTHSSQDTGSCGIQEDGKLYVVDSINDLNKLNLCPAGSQHLFPLEDKIPVLGTNSGNGSRSLFFVGLLIV
LIVSLALVFFVIFLIVQTGNKMDDVSRRLTAEGKDIDDLKRINNMIVKRLNQLNQLDSEQN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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