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Report for CCDS47937.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47937.1 Public Homo sapiens 8 SPATC1 24 110 108 CCDS HistoryNCBI Gene:375686Re-query CCDS DB by CCDS ID:47937.1Re-query CCDS DB by GeneID:375686See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47937.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000447830.2 ENSP00000387613.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000447830.2Link to Ensembl Protein Viewer:ENSP00000387613.2Re-query CCDS DB by Nucleotide ID:ENST00000447830Re-query CCDS DB by Protein ID:ENSP00000387613
Original member Current member NCBI NM_001134374.2 NP_001127846.1 Accepted alive Link to Nucleotide Sequence:NM_001134374.2Link to Protein Sequence:NP_001127846.1Re-query CCDS DB by Nucleotide ID:NM_001134374Re-query CCDS DB by Protein ID:NP_001127846Link to BLAST:NP_001127846.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127846.1 441 Q76KD6-2 441 100% 0 0

Chromosomal Locations for CCDS 47937.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 144012516 144012726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144039909 144040463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144040568 144041107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144046627 144046646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1326 nt):
ATGTCTCTACTCACCAATTATGAAGGGCTTCGGCATCAGATAGAGAGGCTGGTGCGGGAAAATGAGGAAC
TGAAGAAGTTGGTGCGGCTCATTCGGGAGAATCACGAGCTCAAGTCAGCGATCAAGACTCAGGCAGGCGG
GCTCGGCATCAGCGGGTTCACGAGTGGGCTTGGTGAGGCAACAGCAGGCCTTTCCTCACGCCAGAACAAT
GGTGTCTTCCTGCCCCCGTCCCCAGCAGTGGCAAACGAACGAGTCCTCGAAGAAGTGGGGATCATGGCCT
TGGCACCCCTGGCCGAGATGCTAACCAGCTTGCAGCCCAGCGCCACACCGGGCTCACTCATGAGCCCCCT
GACAGGCACCCTCAGCACGCTGCTGTCTGGCCCAGCACCCACGTCACAGAGCAGCCCCCTCACCAGCTTC
CTGACCAGTCCCATTGCGGGACCCCTAACAGGCACACTGGCCAGTTCCCTGGGCCTGCCCTCCACTGGCA
CCCTGACTCCCAGCAGCCTCGTGGCAGGCCCTGTGGCCATGTCCCAGAGCAGCCCCCTGATAGCCCCTGT
GATGGGCACGGTGGCTGTCTCTCTGAGCAGCCCCCTCCTCAGCTCCACTGCCACCCCACCAGGGGTCTCT
CAGAACCTGCTGGCCAACCCCATGAGCAACCTGGTCCTGCCAGAGGCCCCAAGGCTGCGGCTGGCTGAGC
CACTCCGCGGAGGCCCCACTGGGCCCCAGTCCCCAGCTTGCGTGGTACCCACTGCCACCACCAAAGTCCC
ACTCTCCACTGAGCCCCCCCAGTCGACCCAGGACCCAGAGCCTCTCAGCATGGCGTTTGCAGGAGCACCC
CTCCAGACCTCCACCCCTATCGGAGCCATGGGCACACCTGCTCCCAAGACGGCCTTCTCCTTCAACACTT
CGGACACACAGGCCCAGCCCAGTGCCGCCCAGGAACAAGTGGTCCCTGCATCTGTCCCCACCTCCCCCAC
CACCTCCCCCACGGTCACCGTCCTTGCCTCTGCCCCCGCCCTTGCCCCCCAGGTTGCCACCAGCTACACA
CCCTCAAGCACCACCCACATCGCCCAGGGTGCCCCCCATCCCCCTTCCCGAATGCATAATTCCCCAACCC
AGAACCTGCCTGTCCCCCACTGTCCTCCACACAACGCCCACTCCCCACCTCGTACCTCATCCTCCCCGGC
TTCAGTCAATGACTCTCGAGGTCCACGCACCACAGAACCGTCGACGAAGAGCATGATGGAGGTGGAACGG
AAGCTGGCCCACCGCAAGACCAGCAAGTTCCCCGAGAACCCCCGAGGCTTCCCTGAACCCCAGTGA

Translation (441 aa):
MSLLTNYEGLRHQIERLVRENEELKKLVRLIRENHELKSAIKTQAGGLGISGFTSGLGEATAGLSSRQNN
GVFLPPSPAVANERVLEEVGIMALAPLAEMLTSLQPSATPGSLMSPLTGTLSTLLSGPAPTSQSSPLTSF
LTSPIAGPLTGTLASSLGLPSTGTLTPSSLVAGPVAMSQSSPLIAPVMGTVAVSLSSPLLSSTATPPGVS
QNLLANPMSNLVLPEAPRLRLAEPLRGGPTGPQSPACVVPTATTKVPLSTEPPQSTQDPEPLSMAFAGAP
LQTSTPIGAMGTPAPKTAFSFNTSDTQAQPSAAQEQVVPASVPTSPTTSPTVTVLASAPALAPQVATSYT
PSSTTHIAQGAPHPPSRMHNSPTQNLPVPHCPPHNAHSPPRTSSSPASVNDSRGPRTTEPSTKSMMEVER
KLAHRKTSKFPENPRGFPEPQ


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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