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Report for CCDS20258.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20258.1 Public Mus musculus 6 Reg3g 23 108 98 CCDS HistoryNCBI Gene:19695Re-query CCDS DB by CCDS ID:20258.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20258.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032089.2 ENSMUSP00000032089.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032089.2Link to Ensembl Protein Viewer:ENSMUSP00000032089.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000032089Re-query CCDS DB by Protein ID:ENSMUSP00000032089
Original member Current member NCBI NM_011260.2 NP_035390.1 Accepted alive Link to Nucleotide Sequence:NM_011260.2Link to Protein Sequence:NP_035390.1Re-query CCDS DB by Nucleotide ID:NM_011260Re-query CCDS DB by Protein ID:NP_035390Link to BLAST:NP_035390.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035390.1 174 O09049 174 100% 0 0

Chromosomal Locations for CCDS 20258.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 78466485 78466552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 78466767 78466890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 78467476 78467613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 78467799 78467917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 78468487 78468562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (525 nt):
ATGCTTCCCCGTATAACCATCACCATCATGTCCTGGATGCTGCTCTCCTGCCTGATGCTCCTTTCTCAGG
TGCAAGGTGAAGTTGCCAAGAAAGATGCCCCATCTTCACGTAGCAGCTGCCCCAAGGGCTCCCGTGCCTA
TGGCTCCTATTGCTATGCCTTGTTTAGTGTATCTAAAAACTGGTATGATGCAGATATGGCCTGCCAAAAG
AGGCCCTCAGGACATCTTGTGTCTGTGCTCAGTGGCGCTGAAGCTTCCTTCCTGTCCTCCATGATCAAAA
GCAGTGGTAACAGTGGCCAATATGTATGGATTGGGCTCCATGACCCGACACTGGGCTATGAACCCAACAG
AGGTGGATGGGAGTGGAGCAATGCTGATGTGATGAATTACATCAACTGGGAGACGAATCCTTCCTCTTCC
TCAGGCAATCACTGTGGTACCCTGTCAAGAGCCTCAGGATTTCTGAAGTGGAGAGAGAATTATTGTAACT
TAGAGTTACCCTATGTCTGCAAATTCAAGGCCTAG

Translation (174 aa):
MLPRITITIMSWMLLSCLMLLSQVQGEVAKKDAPSSRSSCPKGSRAYGSYCYALFSVSKNWYDADMACQK
RPSGHLVSVLSGAEASFLSSMIKSSGNSGQYVWIGLHDPTLGYEPNRGGWEWSNADVMNYINWETNPSSS
SGNHCGTLSRASGFLKWRENYCNLELPYVCKFKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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