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Report for CCDS55015.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55015.1 Public Homo sapiens 6 VEGFA 24 110 108 CCDS HistoryNCBI Gene:7422Re-query CCDS DB by CCDS ID:55015.1Re-query CCDS DB by GeneID:7422See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 55015.1
This CCDS, which is supported by the mRNA DQ229900.1, represents a VEGFA isoform derived from an AUG start codon. Alternative translation initiation from multiple upstream non-AUG(CUG) codons is also possible for this gene, as indicated in PMIDs:11352659, 11563986 and 11731620. The longest isoform encoded by this variant, which is derived from the 5'-most CUG start codon, is represented by CCDS 55007.1.

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 55015.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000457104.6 ENSP00000409911.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000457104.6Link to Ensembl Protein Viewer:ENSP00000409911.2Re-query CCDS DB by Nucleotide ID:ENST00000457104Re-query CCDS DB by Protein ID:ENSP00000409911
Original member Current member NCBI NM_001171630.2 NP_001165101.1 Accepted alive Link to Nucleotide Sequence:NM_001171630.2Link to Protein Sequence:NP_001165101.1Re-query CCDS DB by Nucleotide ID:NM_001171630Re-query CCDS DB by Protein ID:NP_001165101Link to BLAST:NP_001165101.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165101.1 137 P15692-10 137 100% 0 0

Chromosomal Locations for CCDS 55015.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 43771247 43771312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43774341 43774392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43777469 43777665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43778460 43778536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43784541 43784562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (414 nt):
ATGAACTTTCTGCTGTCTTGGGTGCATTGGAGCCTTGCCTTGCTGCTCTACCTCCACCATGCCAAGTGGT
CCCAGGCTGCACCCATGGCAGAAGGAGGAGGGCAGAATCATCACGAAGTGGTGAAGTTCATGGATGTCTA
TCAGCGCAGCTACTGCCATCCAATCGAGACCCTGGTGGACATCTTCCAGGAGTACCCTGATGAGATCGAG
TACATCTTCAAGCCATCCTGTGTGCCCCTGATGCGATGCGGGGGCTGCTGCAATGACGAGGGCCTGGAGT
GTGTGCCCACTGAGGAGTCCAACATCACCATGCAGATTATGCGGATCAAACCTCACCAAGGCCAGCACAT
AGGAGAGATGAGCTTCCTACAGCACAACAAATGTGAATGCAGATGTGACAAGCCGAGGCGGTGA

Translation (137 aa):
MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVDIFQEYPDEIE
YIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEMSFLQHNKCECRCDKPRR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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