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Report for CCDS29520.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29520.1 Public Mus musculus 19 Otub1 23 108 98 CCDS HistoryNCBI Gene:107260Re-query CCDS DB by CCDS ID:29520.1Re-query CCDS DB by GeneID:107260See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29520.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025679.10 ENSMUSP00000025679.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025679.10Link to Ensembl Protein Viewer:ENSMUSP00000025679.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000025679Re-query CCDS DB by Protein ID:ENSMUSP00000025679
Original member Current member NCBI NM_134150.2 NP_598911.1 Accepted alive Link to Nucleotide Sequence:NM_134150.2Link to Protein Sequence:NP_598911.1Re-query CCDS DB by Nucleotide ID:NM_134150Re-query CCDS DB by Protein ID:NP_598911Link to BLAST:NP_598911.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598911.1 271 Q7TQI3 271 100% 0 0

Chromosomal Locations for CCDS 29520.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 7199042 7199239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7199372 7199566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7199663 7199747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7199943 7200061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7204058 7204156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7204390 7204451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7206202 7206259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGGCGGCGGAGGAACCTCAGCAGCAGAAGCAGGAGCCACTGGGTAGCGACTCCGAAGGTGTTAACTGTT
TGGCCTATGATGAAGCCATTATGGCTCAGCAGGACCGAATTCAGCAAGAGATTGCTGTGCAGAATCCTCT
GGTGTCAGAGCGGCTGGAACTCTCAGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTACCAACAG
AAGATCAAGGACCTCCACAAAAAGTACTCATACATACGGAAGACCCGGCCTGATGGCAACTGCTTCTACC
GAGCGTTTGGCTTCTCCCACCTGGAGGCACTGCTAGATGACAGCAAGGAACTGCAGCGGTTCAAAGCCGT
GTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAAC
ACGTTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATG
ACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAG
CAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAGGAGGTGGAACCC
ATGTGCAAGGAGAGCGACCACATCCACATCATAGCCCTGGCCCAGGCCCTCAGTGTGTCCATCCAAGTGG
AGTACATGGACCGCGGCGAGGGCGGCACCACCAACCCACACGTCTTCCCCGAGGGCTCCGAGCCCAAGGT
CTACCTTCTCTACCGACCTGGACACTACGATATCCTCTACAAATAG

Translation (271 aa):
MAAEEPQQQKQEPLGSDSEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQ
KIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHN
TFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEP
MCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHVFPEGSEPKVYLLYRPGHYDILYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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