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Report for CCDS25819.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25819.1 Public Mus musculus 12 Ddx1 23 108 98 CCDS HistoryNCBI Gene:104721Re-query CCDS DB by CCDS ID:25819.1Re-query CCDS DB by GeneID:104721See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25819.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071103.9 ENSMUSP00000065987.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071103.9Link to Ensembl Protein Viewer:ENSMUSP00000065987.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000071103Re-query CCDS DB by Protein ID:ENSMUSP00000065987
Original member Current member NCBI NM_134040.1 NP_598801.1 Accepted alive Link to Nucleotide Sequence:NM_134040.1Link to Protein Sequence:NP_598801.1Re-query CCDS DB by Nucleotide ID:NM_134040Re-query CCDS DB by Protein ID:NP_598801Link to BLAST:NP_598801.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598801.1 740 Q91VR5 740 100% 0 0

Chromosomal Locations for CCDS 25819.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 13219498 13219628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13220347 13220467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13220738 13220833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13223676 13223718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13223793 13223865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13223942 13224014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13225399 13225490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13227305 13227451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13229093 13229144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13229242 13229430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13230292 13230381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13231445 13231543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13234040 13234100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13235994 13236132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13237213 13237327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13237729 13237805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13239106 13239178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13239491 13239567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13240559 13240642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13240851 13240934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13242300 13242347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13243860 13243956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13244968 13244997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13245686 13245749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13246026 13246077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 13249104 13249119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2223 nt):
ATGGCGGCCTTCTCCGAAATGGGTGTTATGCCGGAGATTGCACAAGCTGTGGAGGAGATGGATTGGCTTC
TACCAACTGATATCCAGGCAGAATCTATCCCATTGATCCTAGGAGGAGGGGATGTACTCATGGCTGCAGA
AACAGGAAGTGGAAAAACTGGTGCATTTAGTATTCCCGTTATCCAGATAGTGTATGAAACTCTGAAAGAC
CAACAGGAAGGAAAGAAAGGGAAAACAACTATTAAAACTGGTGCTTCAGTGCTCAACAAGTGGCAGATGA
ACCCATATGATAGAGGGTCTGCTTTTGCAATTGGATCAGATGGTCTGTGTTGTCAGAGCAGAGAAGTGAA
GGAGTGGCATGGATGCAGAGGAACTAGAGGACTGCTGAAAGGGAAGCACTACTATGAGGTGTCCTGTCAT
GACCAAGGGCTATGCAGAGTTGGGTGGTCTACCATGCAGGCTTCCTTAGACCTAGGTACTGACAAGTTTG
GATTTGGCTTCGGTGGAACAGGAAAGAAATCTCATAATAAACAATTTGATAATTATGGAGAGGAATTCAC
TATGCATGATACCATTGGATGTTACTTAGATATCGATAAAGGGCATGTGAAGTTCTCTAAGAATGGAAAA
GATCTTGGTCTGGCATTTGAAATACCAGCACATATAAAAAACCAAGCCCTCTTCCCTGCCTGTGTTTTGA
AGAATGCTGAATTGAAATTTAACTTTGGTGAAGAAGAATTTAAGTTTCCACCAAAAGATGGTTTTGTTGC
TCTTTCCAAGGCCCCAGATAATTACATCGTCAAATCTCAGCACACAGGTAATGCACAGGTGTCACAAACA
AAATTTCTCCCGAATGCTCCAAAAGCTCTCATTGTGGAACCCTCCAGAGAGTTAGCTGAGCAAACCTTGA
ACAACGTCAAGCAGTTTAAGAAGTATATTGATAATCCTAAATTGCGGGAGCTTCTCATAATTGGTGGCGT
TGCGGCTCGGGATCAGCTCTCTGTTCTGGATAATGGGGTTGACATTGTTGTCGGTACTCCAGGAAGATTG
GATGATTTGGTGTCGACTGGAAAGCTCAACTTGTCTCAAGTTAGATTCCTGGTCCTGGATGAAGCAGATG
GGCTTCTCTCTCAAGGCTACTCTGACTTCATTAACCGGATGCACAACCAGATTCCGCAGATTACGTGTGA
TGGGAAAAGACTTCAGGTGATTGTTTGCTCTGCTACTCTGCATTCTTTTGATGTAAAGAAGCTATCGGAG
AAGATAATGCATTTTCCCACATGGGTCGATTTGAAAGGAGAAGATTCTGTTCCAGATACTGTGCATCATG
TCGTTGTCCCTGTGAACCCCAAAACTGACAAGCTTTGGGAAAGGCTGGGGAAGAACCACATTCGAACTGA
TGATGTACACGCAAAGGATAACACAAGACCTGGTGCTAACAGTCCAGAGATGTGGTCTGAAGCTATTAAA
ATACTGAAGGGGGAGTATGCTGTCCGAGCAATCAAGGAACACAAGATGGATCAAGCAATTATCTTCTGTA
GAACTAAAATTGACTGTGATAACTTGGAGCAGTACTTTATGCAGCAAGGAGGAGGACCTGACAAAAAAGG
ACACCAGTTCTCATGTGTATGTCTTCATGGTGACAGAAAGCCTCATGAGAGAAAGCAAAACTTGGAACGA
TTTAAGAAAGGAGACGTAAGATTCTTGATTTGCACAGATGTAGCTGCTAGAGGGATTGATATCCATGGCG
TTCCTTATGTGATCAACGTCACCCTGCCTGATGAGAAGCAGAATTATGTGCACCGGATCGGCAGAGTGGG
ACGAGCTGAAAGGATGGGCCTGGCTATTTCCCTGGTGGCAACCGAGAAAGAAAAGGTTTGGTATCATGTA
TGTAGCAACCGTGGGAAGGGATGCTATAACACTAGACTCAAGGAAGATGGCGGCTGTACTATCTGGTACA
ATGAAATGCAGCTACTTTCCGAGATAGAAGAGCACCTGAACTGCACCATTTCCCAGGTCGAGCCAGATAT
AAAGGTTCCAGTGGATGAGTTTGATGGGAAAGTCACATACGGTCAAAAAAGGGCTGCTGGCGGTGGAAAC
TACAAAGGCCATGTGGATGTCCTGGCACCTACCGTTCAAGAGTTGGCTGCCCTTGAAAAGGAAGCACAGA
CCTCTTTCCTACACCTTGGCTACCTTCCCAACCAGCTGTTCCGAACCTTCTGA

Translation (740 aa):
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKD
QQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRGTRGLLKGKHYYEVSCH
DQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGK
DLGLAFEIPAHIKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDNYIVKSQHTGNAQVSQT
KFLPNAPKALIVEPSRELAEQTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRL
DDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQITCDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDKLWERLGKNHIRTDDVHAKDNTRPGANSPEMWSEAIK
ILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLER
FKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV
CSNRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGN
YKGHVDVLAPTVQELAALEKEAQTSFLHLGYLPNQLFRTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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