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Report for CCDS40968.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40968.1 Public Mus musculus X Stk26 23 108 98 CCDS HistoryNCBI Gene:70415Re-query CCDS DB by CCDS ID:40968.1Re-query CCDS DB by GeneID:70415See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40968.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033444.10 ENSMUSP00000033444.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033444.10Link to Ensembl Protein Viewer:ENSMUSP00000033444.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033444Re-query CCDS DB by Protein ID:ENSMUSP00000033444
Original member NCBI NM_133729.2 NP_598490.1 Updated not alive Link to Nucleotide Sequence:NM_133729.2Link to Protein Sequence:NP_598490.1Re-query CCDS DB by Nucleotide ID:NM_133729Re-query CCDS DB by Protein ID:NP_598490
Current member NCBI NM_133729.3 NP_598490.1 Accepted alive Link to Nucleotide Sequence:NM_133729.3Link to Protein Sequence:NP_598490.1Re-query CCDS DB by Nucleotide ID:NM_133729Re-query CCDS DB by Protein ID:NP_598490Link to BLAST:NP_598490.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598490.1 416 Q99JT2 416 100% 0 0

Chromosomal Locations for CCDS 40968.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 50841794 50841835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 50870256 50870486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 50879489 50879545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 50885589 50885697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 50885787 50885944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 50886651 50886836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 50887861 50888009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 50889016 50889109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 50889689 50889751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 50889833 50889969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 50891300 50891324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGGCCCACTCACCGGTGGCTGTTCAAGTGCCTGGGATGCAGAATAATATAGCAGATCCAGAAGAACTGT
TCACAAAATTAGAGCGCATTGGAAAAGGCTCCTTTGGAGAAGTTTTCAAAGGAATTGATAACCGTACTCA
GCAAGTGGTTGCAATTAAAATCATTGACCTTGAGGAAGCTGAGGATGAAATAGAAGACATCCAACAAGAA
ATAACTGTTTTGAGTCAGTGCGACAGCTCATATGTAACAAAATACTATGGGTCCTATTTAAAGGGTTCAA
AACTATGGATAATAATGGAATACCTAGGTGGAGGTTCAGCATTGGATCTTCTGCGTGCTGGTCCATTTGA
TGAGTTCCAGATTGCCACCATGCTCAAGGAGATTTTGAAAGGTCTGGACTATCTACATTCTGAAAAGAAA
ATCCACCGAGACATTAAAGCTGCCAACGTCTTGCTTTCAGAACAAGGTGATGTTAAACTGGCTGACTTTG
GAGTTGCTGGCCAGCTGACAGATACACAAATCAAAAGAAACACCTTCGTAGGGACTCCGTTTTGGATGGC
TCCTGAAGTTATTCAACAGTCAGCTTATGACTCTAAAGCTGACATATGGTCTTTGGGAATTACTGCTATT
GAACTTGCCAAGGGAGAGCCTCCGAATTCTGACATGCATCCAATGAGAGTTCTGTTTCTTATTCCAAAAA
ACAACCCTCCAACTCTTATTGGAGACTTTACTAAGTCTTTCAAGGAGTTTATTGATGCTTGCCTGAATAA
AGACCCGTCATTTCGTCCTACAGCTAAAGAACTTTTGAAGCATAAGTTCATCGTAAAAAATTCAAAGAAG
ACTTCTTATCTGACTGAATTGATCGATCGATTTAAGAGATGGAAGGCAGAAGGCCACAGTGATGAGGAAT
CTGATTCCGAGGGCTCTGACTCGGAATCCAGCAGCAGGGAAAGTAACCCTCACCCTGAATGGAGTTTCAC
CACTGTGCGTAAGAAGCCTGATCCAAAGAAACTGCAGAATGGGGAAGAGCAAGATCTTGTGCAAACCTTG
AGCTGTTTGTCTATGATAATCACACCTGCATTTGCCGAACTTAAACAGCAGGACGAGAATAATGCGAGTC
GAAACCAGGCAATTGAAGAACTTGAGAAAAGTATTGCTGTGGCTGAAACCGCCTGTCCTGGCATCACAGA
TAAGATGGTGAAGAAACTAATCGAAAAATTTCAAAAGTGTTCTGCGGATGAATCCCCTTAA

Translation (416 aa):
MAHSPVAVQVPGMQNNIADPEELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQE
ITVLSQCDSSYVTKYYGSYLKGSKLWIIMEYLGGGSALDLLRAGPFDEFQIATMLKEILKGLDYLHSEKK
IHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAI
ELAKGEPPNSDMHPMRVLFLIPKNNPPTLIGDFTKSFKEFIDACLNKDPSFRPTAKELLKHKFIVKNSKK
TSYLTELIDRFKRWKAEGHSDEESDSEGSDSESSSRESNPHPEWSFTTVRKKPDPKKLQNGEEQDLVQTL
SCLSMIITPAFAELKQQDENNASRNQAIEELEKSIAVAETACPGITDKMVKKLIEKFQKCSADESP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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