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Report for CCDS11179.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11179.2 Public Homo sapiens 17 ZNF287 24 110 108 CCDS HistoryNCBI Gene:57336Re-query CCDS DB by CCDS ID:11179.2Re-query CCDS DB by GeneID:57336See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 11179.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11179.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395824.5 ENSP00000379168.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395824.5Link to Ensembl Protein Viewer:ENSP00000379168.1Re-query CCDS DB by Nucleotide ID:ENST00000395824Re-query CCDS DB by Protein ID:ENSP00000379168
Original member Current member EBI ENST00000395825.4 ENSP00000379169.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395825.4Link to Ensembl Protein Viewer:ENSP00000379169.3Re-query CCDS DB by Nucleotide ID:ENST00000395825Re-query CCDS DB by Protein ID:ENSP00000379169
Original member Current member NCBI NM_001346167.2 NP_001333096.1 Accepted alive Link to Nucleotide Sequence:NM_001346167.2Link to Protein Sequence:NP_001333096.1Re-query CCDS DB by Nucleotide ID:NM_001346167Re-query CCDS DB by Protein ID:NP_001333096Link to BLAST:NP_001333096.1
Original member Current member NCBI NM_001346168.2 NP_001333097.1 Accepted alive Link to Nucleotide Sequence:NM_001346168.2Link to Protein Sequence:NP_001333097.1Re-query CCDS DB by Nucleotide ID:NM_001346168Re-query CCDS DB by Protein ID:NP_001333097Link to BLAST:NP_001333097.1
Original member Current member NCBI NM_001346169.2 NP_001333098.1 Accepted alive Link to Nucleotide Sequence:NM_001346169.2Link to Protein Sequence:NP_001333098.1Re-query CCDS DB by Nucleotide ID:NM_001346169Re-query CCDS DB by Protein ID:NP_001333098Link to BLAST:NP_001333098.1
Original member Current member NCBI NM_020653.4 NP_065704.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020653.4Link to Protein Sequence:NP_065704.2Re-query CCDS DB by Nucleotide ID:NM_020653Re-query CCDS DB by Protein ID:NP_065704Link to BLAST:NP_065704.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001333096.1 761 Q9HBT7 761 100% 0 0
NP_001333097.1 761 Q9HBT7 761 100% 0 0
NP_001333098.1 761 Q9HBT7 761 100% 0 0
NP_065704.2 761 Q9HBT7 761 100% 0 0

Chromosomal Locations for CCDS 11179.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 16551856 16553426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 16563146 16563232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 16563699 16563825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 16566525 16566622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 16567329 16567731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2286 nt):
ATGTTAGCCTCAAGCAAGAGGATGAACAGTTCTTCACGTTCTCAAATCCTTCTAAGGTGGAAGTCAGACA
AGGCTCAGAGTGGACCCTACAATGTTGAGAAGGAAATCCTTACTTCAAGATTCTTGCGTGACACTGAGAC
CTGTCGACAGAATTTTAGGAATTTTCCATACCCAGACCTGGCTGGTCCTCGAAAGGCATTGAGTCAACTC
CGAGAGCTCTGCCTTAAGTGGCTGAGACCTGAGATTCACTCAAAGGAACAAATTTTGGAGCTGCTGGTGC
TGGAGCAATTCCTGACCATCCTGCCTGGTGAGGTTAGGACTTGGGTAAAGTCCCAGTATCCAGAGAGCAG
CGAGGAAGCAGTGACTCTGGTGGAGGATTTGACTCAGATTCTAGAAGAGGAAGCTCCTCAAAACTCTACC
CTTTCCCAAGATACCCCAGAGGAAGACCCCAGAGGAAAACATGCTTTCCAGACAGGATGGCTAAATGACT
TGGTGACCAAAGAATCGATGACATTCAAAGATGTGGCTGTAGACATCACCCAGGAGGACTGGGAGTTAAT
GCGTCCTGTGCAGAAGGAATTATACAAGACTGTGACGTTACAGAACTATTGGAACATGGTTTCTCTGGGA
CTTACAGTGTACAGACCAACTGTGATTCCCATATTGGAAGAACCATGGATGGTGATAAAAGAAATTTTAG
AAGGCCCTAGTCCAGAATGGGAAACTAAAGCCCAAGCATGTACTCCAGTGGAGGATATGTCTAAACTCAC
AAAGGAAGAAACCCATACCATCAAATTAGAAGACTCATATGACTACGATGATAGACTAGAGAGGCGAGGA
AAAGGTGGCTTCTGGAAAATTCACACTGATGAAAGAGGTTTCAGTTTGAAGTCAGTCCTTTCACAAGAAT
ATGATCCTACAGAAGAATGTCTTAGTAAATATGATATATATAGAAATAATTTTGAAAAGCATTCAAACCT
AATTGTACAGTTTGATACCCAATTAGATAATAAAACTTCTGTGTATAATGAAGGCAGGGCAACCTTCAAT
CATGTCTCATATGGTATTGTACATAGGAAAATACTTCCTGGAGAGAAGCCTTACAAGTGTAATGTGTGTG
GGAAAAAATTTAGGAAATACCCATCCCTCCTGAAACACCAAAGTACCCATGCCAAAGAGAAATCGTATGA
ATGTGAAGAATGTGGGAAAGAGTTTAGGCATATCTCATCCCTTATTGCACATCAGAGAATGCACACTGGA
GAAAAACCATATGAATGCCACCAGTGTGGTAAAGCCTTCAGCCAGCGTGCACACCTTACTATACATCAGA
GAATTCATACTGGAGAGAAACCCTATAAGTGTGATGACTGTGGGAAAGACTTCAGTCAGCGTGCACACCT
TACCATCCATCAAAGGACACATACTGGAGAGAAACCATATAAATGCTTGGAATGTGGTAAAACCTTCAGT
CATAGTTCATCACTGATTAATCATCAGAGAGTTCATACTGGAGAAAAACCTTATATATGCAATGAATGTG
GGAAGACTTTCAGTCAGAGTACACACCTTCTTCAGCATCAAAAAATACATACTGGGAAGAAACCATATAA
ATGCAATGAATGTTGGAAAGTGTTTAGTCAGAGTACTTACCTTATTCGACATCAGAGAATTCATTCTGGA
GAGAAGTGTTATAAATGTAATGAATGTGGAAAAGCCTTTGCTCATTCCTCAACCCTTATTCAACATCAAA
CCACTCACACTGGAGAGAAATCCTATATATGTAATATATGTGGGAAAGCCTTCAGCCAGAGTGCAAATCT
TACTCAACATCATAGAACACATACTGGAGAGAAACCATATAAATGCAGTGTGTGTGGGAAAGCATTCAGC
CAGAGTGTGCACCTTACTCAACATCAGAGGATTCATAATGGAGAAAAACCCTTTAAATGCAATATATGTG
GGAAAGCATATAGACAAGGCGCAAATCTTACTCAGCATCAAAGGATTCATACTGGAGAAAAACCCTATAA
ATGTAATGAATGTGGGAAAGCTTTCATTTATTCCTCATCACTTAATCAACATCAGAGAACTCATACTGGA
GAGAGACCCTATAAATGTAATGAATGTGATAAGGATTTTAGCCAGAGAACATGCCTTATTCAACACCAGA
GAATTCACACAGGAGAGAAACCCTATGCATGTCGTATATGTGGTAAAACCTTCACCCAGAGTACAAACCT
TATTCAGCATCAACGTGTTCATACAGGTGCCAAACATCGTAATTAA

Translation (761 aa):
MLASSKRMNSSSRSQILLRWKSDKAQSGPYNVEKEILTSRFLRDTETCRQNFRNFPYPDLAGPRKALSQL
RELCLKWLRPEIHSKEQILELLVLEQFLTILPGEVRTWVKSQYPESSEEAVTLVEDLTQILEEEAPQNST
LSQDTPEEDPRGKHAFQTGWLNDLVTKESMTFKDVAVDITQEDWELMRPVQKELYKTVTLQNYWNMVSLG
LTVYRPTVIPILEEPWMVIKEILEGPSPEWETKAQACTPVEDMSKLTKEETHTIKLEDSYDYDDRLERRG
KGGFWKIHTDERGFSLKSVLSQEYDPTEECLSKYDIYRNNFEKHSNLIVQFDTQLDNKTSVYNEGRATFN
HVSYGIVHRKILPGEKPYKCNVCGKKFRKYPSLLKHQSTHAKEKSYECEECGKEFRHISSLIAHQRMHTG
EKPYECHQCGKAFSQRAHLTIHQRIHTGEKPYKCDDCGKDFSQRAHLTIHQRTHTGEKPYKCLECGKTFS
HSSSLINHQRVHTGEKPYICNECGKTFSQSTHLLQHQKIHTGKKPYKCNECWKVFSQSTYLIRHQRIHSG
EKCYKCNECGKAFAHSSTLIQHQTTHTGEKSYICNICGKAFSQSANLTQHHRTHTGEKPYKCSVCGKAFS
QSVHLTQHQRIHNGEKPFKCNICGKAYRQGANLTQHQRIHTGEKPYKCNECGKAFIYSSSLNQHQRTHTG
ERPYKCNECDKDFSQRTCLIQHQRIHTGEKPYACRICGKTFTQSTNLIQHQRVHTGAKHRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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