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Report for CCDS8.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8.1 Public Homo sapiens 1 TTLL10 24 110 108 CCDS HistoryNCBI Gene:254173Re-query CCDS DB by CCDS ID:8.1Re-query CCDS DB by GeneID:254173See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379288.3 ENSP00000368590.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379288.3Link to Ensembl Protein Viewer:ENSP00000368590.3Re-query CCDS DB by Nucleotide ID:ENST00000379288Re-query CCDS DB by Protein ID:ENSP00000368590
Original member Current member NCBI NM_153254.3 NP_694986.2 Accepted alive Link to Nucleotide Sequence:NM_153254.3Link to Protein Sequence:NP_694986.2Re-query CCDS DB by Nucleotide ID:NM_153254Re-query CCDS DB by Protein ID:NP_694986Link to BLAST:NP_694986.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694986.2 404 Q6ZVT0-3 404 100% 0 0

Chromosomal Locations for CCDS 8.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 1180054 1180340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1180483 1180601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1180731 1180860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1181741 1181815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1182361 1182446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1182876 1183047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1183920 1184091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1184969 1185142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1215 nt):
ATGGGGAGCAGCCAGGAGGAGGGACTCCGGTGTCAGCCAAGCCAGCCAGACCACGACGCAGATGGACACT
GTGGGCCGGACCTGGAGGGGGCAGAAAGAGCCTCTGCCACACCCGGACCCCCTGGGCTCCTGAACAGCCA
CCGGCCTGCAGACTCGGATGACACTAACGCCGCCGGGCCCTCAGCTGCCCTCCTGGAGGGGCTCCTGCTG
GGGGGTGGGAAGCCATCGCCCCACAGCACCCGGCCGGGGCCCTTCTTCTACATTGGAGGCAGCAACGGGG
CCACAATCATCAGCTCCTACTGCAAAAGCAAGGGCTGGCAGCGCATCCATGACAGCCGCCGGGACGACTA
CACGCTGAAGTGGTGTGAGGTCAAGAGCCGAGACAGCTACGGCAGCTTCCGGGAAGGAGAGCAGCTGCTG
TACCAGCTTCCCAACAACAAGCTCCTCACCACCAAGATCGGGCTGCTCAGCACCCTTCGGGGACGGGCAC
GGGCCATGAGCAAGGCCAGCAAGGTGCCGGGGGGGGTCCAGGCCAGGCTGGAAAAGGACGCAGCAGCGCC
CGCCCTGGAGGACCTCCCGTGGACAAGCCCAGGATACCTCAGGCCACAGAGGGTCCTGAGAATGGAAGAG
TTTTTCCCAGAGACCTACCGCCTGGACCTCAAACACGAGAGAGAGGCCTTTTTCACCTTGTTTGATGAAA
CCCAGATATGGATCTGCAAGCCCACAGCCTCCAACCAGGGCAAAGGCATCTTCCTGCTCCGGAACCAGGA
GGAAGTTGCCGCCCTGCAGGCCAAGACCCGGAGCATGGAGGACGACCCCATCCACCACAAGACGCCGTTC
CGGGGGCCTCAGGCGCGGGTGGTGCAGAGGTACATCCAGAACCCGCTGCTGGTGGACGGGAGAAAGTTTG
ACGTGCGCTCCTACCTGCTCATTGCCTGCACCACACCCTACATGATCTTCTTTGGCCACGGCTATGCTCG
CCTCACCCTTAGCCTTTACGACCCCCATTCCAGCGACCTCGGCGGCCACTTGACCAACCAGTTCATGCAG
AAGAAGAGCCCTCTGTACATGCTGCTGAAGGAGCACACGGTGTGGAGCATGGAACACCTCAACCGCTACA
TCAGTGACACGTTCTGGAAGGCCCGGGGCCTCGCCAAGGACTGGGTCTTCACCACCCTCAAGGTGCGTCC
ACTGTGCCCTCCAGTCTGGGAGTGA

Translation (404 aa):
MGSSQEEGLRCQPSQPDHDADGHCGPDLEGAERASATPGPPGLLNSHRPADSDDTNAAGPSAALLEGLLL
GGGKPSPHSTRPGPFFYIGGSNGATIISSYCKSKGWQRIHDSRRDDYTLKWCEVKSRDSYGSFREGEQLL
YQLPNNKLLTTKIGLLSTLRGRARAMSKASKVPGGVQARLEKDAAAPALEDLPWTSPGYLRPQRVLRMEE
FFPETYRLDLKHEREAFFTLFDETQIWICKPTASNQGKGIFLLRNQEEVAALQAKTRSMEDDPIHHKTPF
RGPQARVVQRYIQNPLLVDGRKFDVRSYLLIACTTPYMIFFGHGYARLTLSLYDPHSSDLGGHLTNQFMQ
KKSPLYMLLKEHTVWSMEHLNRYISDTFWKARGLAKDWVFTTLKVRPLCPPVWE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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