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Report for CCDS40234.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40234.1 Public Mus musculus 8 Rasa3 23 108 98 CCDS HistoryNCBI Gene:19414Re-query CCDS DB by CCDS ID:40234.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40234.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117551.3 ENSMUSP00000112998.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117551.3Link to Ensembl Protein Viewer:ENSMUSP00000112998.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000117551Re-query CCDS DB by Protein ID:ENSMUSP00000112998
Original member Current member NCBI NM_009025.2 NP_033051.2 Accepted alive Link to Nucleotide Sequence:NM_009025.2Link to Protein Sequence:NP_033051.2Re-query CCDS DB by Nucleotide ID:NM_009025Re-query CCDS DB by Protein ID:NP_033051Link to BLAST:NP_033051.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033051.2 834 Q60790 834 100% 0 0

Chromosomal Locations for CCDS 40234.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 13568691 13568766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13570239 13570422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13576337 13576440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13577360 13577568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13577807 13577889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13578608 13578714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13580034 13580107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13581251 13581328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13582299 13582376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13583750 13583856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13584913 13585036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13585674 13585748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13586874 13586988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13587952 13588100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13588864 13589020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13590202 13590306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13592004 13592080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13595335 13595407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13595809 13595889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13598214 13598290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13605862 13605956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13614534 13614637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13631775 13631892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13677393 13677447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2505 nt):
ATGGCGGTGGAGGAAGAGGGACTGCGGGTCTTCCAGAGCGTGAGGATCAAGATTGGTGAAGCCAAGAATC
TTCCTTCCTACCCGGGGCCAAACAAGATGAGGGACTGCTACTGCACTGTGAACCTGGACCAGGAGGAGGT
TTTCCGGACCAAAATTGTCGAGAAGTCACTCTGCCCCTTTTACGGAGAGGACTTTTACTGTGAAATCCCT
CGGAGTTTCCGCCACCTGTCCTTTTACATTTTTGATAGAGATGTTTTCCGAAGGGACTCCATCATAGGCA
AGGTGGCCATCCAGAAGGAAGACTTGCAGAGGTACCACAACAGGGACACATGGTTCCAGCTGCAGCACGT
GGACGCAGACTCAGAGGTGCAGGGCAAGGTCCACCTGGAGCTGAGACTAAGTGAGGTCATTACGGACACT
GGTGTCGTCTGCCACAAACTCGCTGCACGCATCTTCGAGTGCCAGGGTCTCCCCATTGTGAACGGGCAGT
GTGACCCTTACGCCACAGTGACGCTGGCCGGACCCTTCAGGTCTGAAGCAAAGAAAACGAAGGTGAAGAA
GAAAACCAACAACCCCCAGTTTGACGAGGTGTTTTATTTTGAGGTGACCAGACCCTGCAGCTACAGCAAA
AAGTCCCACTTTGACTTTGAGGAAGAGGACGTGGACAAACTTGAAATCCGAGTTGACCTCTGGAACGCCA
GCAACCTGAAGTTTGGGGATGAGTTTCTCGGGGAACTGAGGCTTCCTCTCAAGATTCTGCGACACTCGAG
CTCTTATGAAGCCTGGTACTTCCTCCAGCCCCGAGACAACGGCAATAAGAGCCTGAAGCCAGATGACTTG
GGGTCTCTGAGGTTAAATGTCGTTTATACAGAAGACCATGTCTTCTCCTCTGAGTACTACAGCCCACTGC
GTGACCTGTTACTGAAGTCTGCAGATGTGGAGCCTGTCTCAGCCTCAGCAGCTCACATCCTGGGTGAGGT
GTGCAGAGACAAGCAAGAGGCAGCCATCCCGCTGGTACGGCTCCTGCTGCACTATGGCAGGGTAGTGCCC
TTCATCAGTGCCATCGCTAGCGCAGAGGTGAAGAGGACCCAGGACCCCAATACCATCTTCCGAGGAAACT
CACTGACATCCAAGTGCATAGATGAGACGATGAAGCTGGCAGGCATGCACTATCTCCATGTGACCCTGAA
GCCCACCATTGAGGAGATCTGCCAGAGCCACAAGTCCTGTGAGATCGACCCTGTGAAACTGAAAGACGGC
GAAAACCTCGAGAACAACATGGAGAGCCTGAGGCAGTATGTGGATCGCATCTTCACTGTCATCACCAAGT
CCGGGGTGAGCTGCCCCACCGTCATGTGTGACATCTTTTTCTCCTTGCGGGAGGCGGCTGCCAAGCGCTT
CCAAGATGACTTGGATGTGAGGTACACGGCCGTGAGCAGCTTCATCTTCCTCAGGTTCTTCGCCCCTGCC
ATCCTGTCCCCAAACCTTTTCCAGCTGACACCCCACCACACGGATCCACAGACTTCTAGAACCCTGACAC
TTATCTCAAAGACGATCCAGACCCTCGGCAGCTTGTCCAAGTCCAAGTCTGCCAGTTTTAAGGAGTCGTA
CATGGCGACATTCTATGAATTCTTCAATGAGCAGAAGTATGCAGATGCTGTAAAAAATTTTCTGGATTTG
ATCTCATCCTCGGGGAGAAGGGACCCCAAGAGCATAGAGCAGCCCATCCTGCTTAAAGAAGGGTTCATGA
TCAAGCGGGCCCAGGGAAGGAAACGGTTTGGAATGAAGAATTTCAAGAAGAGGTGGTTTCGCCTGACGAA
CCACGAGTTCACCTACCAGAAAAGCAAAGGTGATCAGCCACTCTGCAACATCCCCATCGAGAACATCTTG
GCTGTGGAGAGGCTAGAGGAGGAGTCCTTCCGAATGAAAAACATGTTCCAGGTCATCCAGCCAGAGCGTG
CCCTGTACATCCAGGCCAACAACTGTGTGGAGGCCAAGGACTGGATCGACATCCTCACCAAAGTGAGCCA
GTGCAACCAGAAGCGGCTCACCGTCTTCCACCCGTCGGCCTACCTGAACGGCCACTGGCTCTGCTGCAGG
GCCTCCTCAGACACGGCTGCTGGCTGCACTCCCTGCACTGGTGGGCTCCCGGCCAACATCCAGCTGGACA
TTGATGGGGACCGTGAAACAGAGCGCATCTACTCTCTCTTTAACCTGTACATGGGCAAGCTGGAAAAGAT
GCAGGAGGCCTGCGGCAGCAAGTCTGTGTATGACGGCCCTGAGCAGGAGGAGTACTCAACGTTCGTCATC
GACGACCCCCAGGAGACGTACAAGACGCTGAAGCAGGTCATCGCTGGGGTGGGGACCCTTGAGCAGGAGC
ACGCACAGTACAGGAGAGACAAGTTCAAGAAGACGAGATACGGGAGCCAGGAGCACCCTATTGGAGACAA
GAGCTTCCAGAACTACATCCGGCAGCAGTCTGAGATCTCCACCCATTCCATTTAA

Translation (834 aa):
MAVEEEGLRVFQSVRIKIGEAKNLPSYPGPNKMRDCYCTVNLDQEEVFRTKIVEKSLCPFYGEDFYCEIP
RSFRHLSFYIFDRDVFRRDSIIGKVAIQKEDLQRYHNRDTWFQLQHVDADSEVQGKVHLELRLSEVITDT
GVVCHKLAARIFECQGLPIVNGQCDPYATVTLAGPFRSEAKKTKVKKKTNNPQFDEVFYFEVTRPCSYSK
KSHFDFEEEDVDKLEIRVDLWNASNLKFGDEFLGELRLPLKILRHSSSYEAWYFLQPRDNGNKSLKPDDL
GSLRLNVVYTEDHVFSSEYYSPLRDLLLKSADVEPVSASAAHILGEVCRDKQEAAIPLVRLLLHYGRVVP
FISAIASAEVKRTQDPNTIFRGNSLTSKCIDETMKLAGMHYLHVTLKPTIEEICQSHKSCEIDPVKLKDG
ENLENNMESLRQYVDRIFTVITKSGVSCPTVMCDIFFSLREAAAKRFQDDLDVRYTAVSSFIFLRFFAPA
ILSPNLFQLTPHHTDPQTSRTLTLISKTIQTLGSLSKSKSASFKESYMATFYEFFNEQKYADAVKNFLDL
ISSSGRRDPKSIEQPILLKEGFMIKRAQGRKRFGMKNFKKRWFRLTNHEFTYQKSKGDQPLCNIPIENIL
AVERLEEESFRMKNMFQVIQPERALYIQANNCVEAKDWIDILTKVSQCNQKRLTVFHPSAYLNGHWLCCR
ASSDTAAGCTPCTGGLPANIQLDIDGDRETERIYSLFNLYMGKLEKMQEACGSKSVYDGPEQEEYSTFVI
DDPQETYKTLKQVIAGVGTLEQEHAQYRRDKFKKTRYGSQEHPIGDKSFQNYIRQQSEISTHSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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