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Report for CCDS49764.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49764.1 Public Mus musculus 16 Gspt1 23 108 98 CCDS HistoryNCBI Gene:14852Re-query CCDS DB by CCDS ID:49764.1Re-query CCDS DB by GeneID:14852See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49764.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167571.7 ENSMUSP00000130583.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167571.7Link to Ensembl Protein Viewer:ENSMUSP00000130583.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167571Re-query CCDS DB by Protein ID:ENSMUSP00000130583
Original member Current member NCBI NM_001130008.1 NP_001123480.1 Accepted alive Link to Nucleotide Sequence:NM_001130008.1Link to Protein Sequence:NP_001123480.1Re-query CCDS DB by Nucleotide ID:NM_001130008Re-query CCDS DB by Protein ID:NP_001123480Link to BLAST:NP_001123480.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123480.1 635 Q8R050-2 635 100% 0 0

Chromosomal Locations for CCDS 49764.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 11220827 11220879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11222585 11222753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11223212 11223301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11224420 11224593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11228115 11228195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11229209 11229302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11230510 11230650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11230837 11230991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11232532 11232712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11235366 11235443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11237531 11237564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11238872 11239096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11240666 11240707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11240805 11240840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11253643 11253997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1908 nt):
ATGGATCCTAGCAGCGGCGGTGGCGGCGGTGGCGGCGGCGGCGGGAGCAGCAGCAGCAGCGACTCTGCGC
CCGACTGCTGGGACCAGACGGATATGGAGGCCCCCGGGCCCGGGCCTTGCGGCGGCGGCGGGAGCGGCAG
CGGCTCCATGGCCGCGGTGGCCGAGGCCCAGCGTGAGAACCTCAGCGCGGCTTTCAGCCGGCAACTCAAC
GTCAACGCCAAGCCTTTCGTCCCCAACGTCCACGCCGCTGAATTCGTGCCGTCCTTCCTGCGGGGTCCGG
CCCAGCCGCCGCTATCCCCAGCTGGCGCAGCCGGAGGCGACCACGGAGCAGGCAGCGGCGCGGGAGGCCC
TTCGGAACCTGTAGAGTCCTCTCAAGACCAGTCGTGTGAAGGTTCAAATTCTACTGTTAGCATGGAACTT
TCAGAACCTGTTGAAAATGGAGAGACAGAAATGTCCCCAGAAGAATCATGGGAGCACAAAGAAGAAATAA
GTGAAGCGGAGCCAGGGGGTGGTTCCTCAGGAGATGGAAGGCCACCAGAGGAAAGCACCCAAGAAATGAT
GGAGGAGGAGGAAGAAATACCGAAACCTAAGTCAGCGGTGGCACCACCAGGTGCTCCCAAGAAGGAACAT
GTAAATGTAGTGTTCATCGGACATGTTGATGCAGGCAAGTCAACCATTGGAGGACAAATAATGTATTTGA
CTGGAATGGTCGACAAAAGGACACTTGAGAAGTATGAACGAGAAGCTAAAGAAAAAAACAGAGAAACTTG
GTACTTGTCTTGGGCCTTAGACACGAATCAGGAAGAACGAGACAAGGGCAAAACCGTGGAGGTGGGTCGT
GCCTATTTTGAAACGGAAAAGAAGCATTTTACAATTCTAGATGCTCCTGGCCATAAGAGTTTTGTCCCAA
ATATGATTGGTGGTGCCTCTCAAGCTGACTTGGCTGTACTGGTAATCTCAGCCAGGAAAGGAGAGTTTGA
AACTGGATTTGAAAAAGGAGGACAGACAAGAGAACATGCAATGTTGGCAAAGACAGCAGGTGTCAAACAC
TTAATTGTGCTTATTAATAAGATGGATGATCCAACGGTAAACTGGAGCAACGAGAGATATGAAGAATGTA
AAGAGAAACTAGTACCATTTTTGAAAAAAGTTGGCTTCAATCCCAAAAAGGACATTCATTTTATGCCGTG
CTCAGGACTGACAGGAGCGAATCTTAAAGAACAATCAGATTTCTGTCCTTGGTACATTGGCTTACCATTT
ATTCCATATCTGGATAATTTGCCAAACTTCAATAGATCAGTTGATGGACCAATCAGGCTGCCAATTGTCG
ATAAGTACAAGGATATGGGGACTGTGGTCCTGGGAAAGCTGGAATCTGGATCTATTTGTAAAGGCCAGCA
GCTTGTAATGATGCCAAATAAGCACAACGTGGAAGTTCTTGGAATACTTTCTGATGATGTAGAAACGGAC
TCTGTAGCTCCAGGTGAAAACCTCAAAATCAGACTGAAAGGAATTGAAGAGGAAGAGATTCTTCCAGGAT
TCATCCTTTGTGATCTTAATAATCTTTGTCATTCTGGACGCACATTTGATGCTCAGATAGTGATTATAGA
GCACAAGTCCATCATCTGCCCAGGGTATAATGCGGTGCTGCATATTCATACCTGTATCGAAGAAGTCGAA
ATAACAGCCTTAATCTGCTTGGTAGACAAGAAATCAGGAGAGAAAAGTAAGACTCGACCCCGTTTTGTAA
AACAAGATCAAGTATGCATTGCGCGTTTAAGGACAGCAGGAACCATCTGCCTGGAGACCTTTAAGGACTT
CCCTCAGATGGGACGTTTTACCTTAAGAGATGAGGGTAAGACCATTGCAATTGGAAAAGTTCTGAAACTG
GTTCCAGAGAAAGACTAA

Translation (635 aa):
MDPSSGGGGGGGGGGSSSSSDSAPDCWDQTDMEAPGPGPCGGGGSGSGSMAAVAEAQRENLSAAFSRQLN
VNAKPFVPNVHAAEFVPSFLRGPAQPPLSPAGAAGGDHGAGSGAGGPSEPVESSQDQSCEGSNSTVSMEL
SEPVENGETEMSPEESWEHKEEISEAEPGGGSSGDGRPPEESTQEMMEEEEEIPKPKSAVAPPGAPKKEH
VNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGR
AYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKH
LIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPF
IPYLDNLPNFNRSVDGPIRLPIVDKYKDMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETD
SVAPGENLKIRLKGIEEEEILPGFILCDLNNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVE
ITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKL
VPEKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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